Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30874g00005 ATGGGGTTTGAGAAACATATTGGTAAGTATAGGGTTGGAAGGACAATTGGAGAAGGAACATTCTCCAAGGTTAAGCTTGCTGTGAATGTTGACAATGGAGACAAAGTTGCAATCAAAGTCATTGATAAGCATATGGTCATGGAAAACAATCTCAAGAACCAGGTCAAAAGAGAGATTAGTACAATGAAACTTCTGCATCATCCCAATATTGTCAGAATTTTCGAGGTGATTGGGACAAAAACGAAAATATACATTGTGATGGAATATGTCTCAGGAGGACATGTACTAGACAAGTTGTCCTATGAGAAGAAGCTGAGTGAGTGTGTGGCAAGGAAACTATTCCAGCAGCTTATTGATGCCTTGGACTATTGCCATAACAAAGGAGTCTATCACAGAGATCTCAAGCCAGAAAACTTGCTGCTTGACAGCAAAGGAAACCTCAAGGTGTCTGACTTTGGATTAAGTGCACTCCAAAAGCCTAATGATGTCTTAAACACACGTTGTGGCTCCCCATGCTATGTGGCACCTGAGTTGCTACTGAGCAAGGGATATGATGGAGCTTCTGCTGATGTTTGGTCATGTGGGGTGATTCTTTTTGAATTACTTGCAGGCTTCTTACCATTTGATGATCTCAACTTGACGAGTTTATATGAGAAGATATGCAGAGCAGAATACAAATGTCCACCATGGTTTACTCGAACTCAAAAGAAACTAATTGCCAAAATATTTGTATCCCGTCCTGGAAAGAGGATAACTATTCCGGATATTATTGAAGATGAGTGGTTTCAAACAGATTATGAACCTGCTTGTGTATCTGAATGTGATAAGAACATTAAGCTTGATGATTGCAATGCTGCATTTGATTCAGTTGAGGAGAAAATAAGAGAGTCAAAGATACCAAAGTCCTCAAGCTTCATTAATGCATTTCAACTAATAGCCATGTCTCAGGACCTTGATCTTTCTGGCCTTTTTGAAGAAGAACAGGGTCACAAGAAGCAGACAAGATTTGGATCCAAACACACAATCAATGAAACAATAGAAAAAATAGAAGCTGCTGCAACTGATATGAGACTGTCAGTAGAGAAAATAAACAACTTTAAGATAAAAATGCATCCGAAACAGATGATGACTAGATGTTCTAGATCATACTTTGACCTATCAGCCCAGTTGATTGAAGTTGCTCCAACTCATTGTGTTGTAGAAATATCAAAATCTACAGGAGATCTAAGAACATATAACAAATTCTGTGAAAGTCTATCAAGTCTGCTGGAACAACAAGAATCTGAGGAACTATGA 1296 0.385 MGFEKHIGKYRVGRTIGEGTFSKVKLAVNVDNGDKVAIKVIDKHMVMENNLKNQVKREISTMKLLHHPNIVRIFEVIGTKTKIYIVMEYVSGGHVLDKLSYEKKLSECVARKLFQQLIDALDYCHNKGVYHRDLKPENLLLDSKGNLKVSDFGLSALQKPNDVLNTRCGSPCYVAPELLLSKGYDGASADVWSCGVILFELLAGFLPFDDLNLTSLYEKICRAEYKCPPWFTRTQKKLIAKIFVSRPGKRITIPDIIEDEWFQTDYEPACVSECDKNIKLDDCNAAFDSVEEKIRESKIPKSSSFINAFQLIAMSQDLDLSGLFEEEQGHKKQTRFGSKHTINETIEKIEAAATDMRLSVEKINNFKIKMHPKQMMTRCSRSYFDLSAQLIEVAPTHCVVEISKSTGDLRTYNKFCESLSSLLEQQESEEL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30874g00005 431 Pfam Protein kinase domain 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30874g00005 431 SUPERFAMILY Protein kinase-like (PK-like) 7 285 IPR011009 -
Stsc30874g00005 431 CDD CIPK_C 307 425 - -
Stsc30874g00005 431 Pfam NAF domain 304 362 IPR004041 GO:0007165
Stsc30874g00005 431 Gene3D Transferase(Phosphotransferase) domain 1 90 289 - -
Stsc30874g00005 431 FunFam Non-specific serine/threonine protein kinase 2 89 - -
Stsc30874g00005 431 FunFam Non-specific serine/threonine protein kinase 3 303 - -
Stsc30874g00005 431 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Stsc30874g00005 431 Gene3D Kinase associated domain 1, KA1 301 426 - -
Stsc30874g00005 431 ProSiteProfiles Protein kinase domain profile. 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30874g00005 431 FunFam Non-specific serine/threonine protein kinase 301 426 - -
Stsc30874g00005 431 ProSiteProfiles NAF domain profile. 301 325 IPR018451 GO:0007165
Stsc30874g00005 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Stsc30874g00005 431 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 418 - -
Stsc30874g00005 431 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Stsc30874g00005 431 SMART serkin_6 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30874g00005 Stsc-Chr30874 11075 13570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30874g00005 6 419 CBL-interacting serine-threonine protein kinases AT1G01140 48.804 1.36e-145 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Stsc30874g00005 Pkinase 1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30874g00005 - - gmx:100786097 687.952