LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30874g00005	ATGGGGTTTGAGAAACATATTGGTAAGTATAGGGTTGGAAGGACAATTGGAGAAGGAACATTCTCCAAGGTTAAGCTTGCTGTGAATGTTGACAATGGAGACAAAGTTGCAATCAAAGTCATTGATAAGCATATGGTCATGGAAAACAATCTCAAGAACCAGGTCAAAAGAGAGATTAGTACAATGAAACTTCTGCATCATCCCAATATTGTCAGAATTTTCGAGGTGATTGGGACAAAAACGAAAATATACATTGTGATGGAATATGTCTCAGGAGGACATGTACTAGACAAGTTGTCCTATGAGAAGAAGCTGAGTGAGTGTGTGGCAAGGAAACTATTCCAGCAGCTTATTGATGCCTTGGACTATTGCCATAACAAAGGAGTCTATCACAGAGATCTCAAGCCAGAAAACTTGCTGCTTGACAGCAAAGGAAACCTCAAGGTGTCTGACTTTGGATTAAGTGCACTCCAAAAGCCTAATGATGTCTTAAACACACGTTGTGGCTCCCCATGCTATGTGGCACCTGAGTTGCTACTGAGCAAGGGATATGATGGAGCTTCTGCTGATGTTTGGTCATGTGGGGTGATTCTTTTTGAATTACTTGCAGGCTTCTTACCATTTGATGATCTCAACTTGACGAGTTTATATGAGAAGATATGCAGAGCAGAATACAAATGTCCACCATGGTTTACTCGAACTCAAAAGAAACTAATTGCCAAAATATTTGTATCCCGTCCTGGAAAGAGGATAACTATTCCGGATATTATTGAAGATGAGTGGTTTCAAACAGATTATGAACCTGCTTGTGTATCTGAATGTGATAAGAACATTAAGCTTGATGATTGCAATGCTGCATTTGATTCAGTTGAGGAGAAAATAAGAGAGTCAAAGATACCAAAGTCCTCAAGCTTCATTAATGCATTTCAACTAATAGCCATGTCTCAGGACCTTGATCTTTCTGGCCTTTTTGAAGAAGAACAGGGTCACAAGAAGCAGACAAGATTTGGATCCAAACACACAATCAATGAAACAATAGAAAAAATAGAAGCTGCTGCAACTGATATGAGACTGTCAGTAGAGAAAATAAACAACTTTAAGATAAAAATGCATCCGAAACAGATGATGACTAGATGTTCTAGATCATACTTTGACCTATCAGCCCAGTTGATTGAAGTTGCTCCAACTCATTGTGTTGTAGAAATATCAAAATCTACAGGAGATCTAAGAACATATAACAAATTCTGTGAAAGTCTATCAAGTCTGCTGGAACAACAAGAATCTGAGGAACTATGA	1296	0.385	MGFEKHIGKYRVGRTIGEGTFSKVKLAVNVDNGDKVAIKVIDKHMVMENNLKNQVKREISTMKLLHHPNIVRIFEVIGTKTKIYIVMEYVSGGHVLDKLSYEKKLSECVARKLFQQLIDALDYCHNKGVYHRDLKPENLLLDSKGNLKVSDFGLSALQKPNDVLNTRCGSPCYVAPELLLSKGYDGASADVWSCGVILFELLAGFLPFDDLNLTSLYEKICRAEYKCPPWFTRTQKKLIAKIFVSRPGKRITIPDIIEDEWFQTDYEPACVSECDKNIKLDDCNAAFDSVEEKIRESKIPKSSSFINAFQLIAMSQDLDLSGLFEEEQGHKKQTRFGSKHTINETIEKIEAAATDMRLSVEKINNFKIKMHPKQMMTRCSRSYFDLSAQLIEVAPTHCVVEISKSTGDLRTYNKFCESLSSLLEQQESEEL	431

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Stsc30874g00005	431	Pfam	Protein kinase domain	10	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Stsc30874g00005	431	SUPERFAMILY	Protein kinase-like (PK-like)	7	285	IPR011009	-
Stsc30874g00005	431	CDD	CIPK_C	307	425	-	-
Stsc30874g00005	431	Pfam	NAF domain	304	362	IPR004041	GO:0007165
Stsc30874g00005	431	Gene3D	Transferase(Phosphotransferase) domain 1	90	289	-	-
Stsc30874g00005	431	FunFam	Non-specific serine/threonine protein kinase	2	89	-	-
Stsc30874g00005	431	FunFam	Non-specific serine/threonine protein kinase	3	303	-	-
Stsc30874g00005	431	Gene3D	Phosphorylase Kinase; domain 1	2	89	-	-
Stsc30874g00005	431	Gene3D	Kinase associated domain 1, KA1	301	426	-	-
Stsc30874g00005	431	ProSiteProfiles	Protein kinase domain profile.	10	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30874g00005	Stsc-Chr30874	11075	13570	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30874g00005	6	419	CBL-interacting serine-threonine protein kinases	AT1G01140	48.804	1.36e-145	421

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Stsc30874g00005		Pkinase	1e-71	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30874g00005	-		-	gmx:100786097	687.952

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