Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30874g00001 ATGGGAAGAGCTCCATGCTGTGACAAGGCCAACGTGAAGAAAGGACCTTGGTCTCCGGAAGAAGATGCTGCTCTCAAAGCCTACATAGAAAAAAATGGAACTGGAGGCAATTGGATTGCTCTTCCACAAAAAATTGGGCTCAAGAGATGCGGAAAGAGTTGCAGGCTTAGGTGGTTAAACTATTTGAGACCTAACATCAAGCATGGCGGATTTACTGAAGAAGAAGACAACATCATCTGCAGCCTTTACATTAGCATTGGAAGCAGGTGGTCCATTATTGCAGCACAGCTTCCTGGAAGAACAGATAACGACATCAAGAACTACTGGAACACAAGATTGAAGAAGAAACTGCTGGGAAGGCGCAAACAATCAAGCTTCAACAGCTCCAATAAGGAACCCAATAATGGGATGGACGATGACAGCTCTTGTTCTAATAATAATAGTAATGCCCTAAGCAATTCAGCTCTTGAGAGGCTTCAGCTTCACATGCAGCTTCAAAGCCTCCAAAACCCTTTCTCTTTCTACAACAACCCTGCTCTCTGGCCAAAGTTGCATCCTTTTCAAGAAAAGATGATCCACCAGAATCTGCAGCAGCAGCAGCAGCAATCTCCTAGTAATGCTTTTCCTTCCCCTCATCATGATCATGTGCTGAATCAACAAGCAGGGGCAAAGGATACCAAGAATTCAAAGGTTGATATTTTGGAGAATCCATTGAGTAATAATGGTTGTTCATCAGTAGTTCCCTTCACTGGTTCTGGGAACAATAATGATACTAATGCGTTATTGCACTCATCAAGTAGCATTATTGCACCAAGAGGAGATGAGGAGGGTAGTATGGGAATTCAGCAAGTTTGTGCTATGCAAAGTGAGCTTGATGAGATTCTGAATGTGAATAGCAACAGAAGAATGTGTTACATTCCACAGGAGGAGGAGGAGGATCATCAGATTCATGATCAGATGGCTGATGATGAGTTTGACTGTTTGAGAGAGATGAATAACAATAATGGTTCAAAGGATAATAATAATAATAGCTTGATTTGGTGGTCCAATGATTCTTCAGCTGATACCAAATCAGGATCCTCAAGTTCTTGGGAGTCAATGTCATCCACTACTCCAGTTCTTCTGCCAGAAGGGATGTTCCAAGATTATGAACTAGGTTACACTTTATAG 1170 0.4214 MGRAPCCDKANVKKGPWSPEEDAALKAYIEKNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNIICSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRRKQSSFNSSNKEPNNGMDDDSSCSNNNSNALSNSALERLQLHMQLQSLQNPFSFYNNPALWPKLHPFQEKMIHQNLQQQQQQSPSNAFPSPHHDHVLNQQAGAKDTKNSKVDILENPLSNNGCSSVVPFTGSGNNNDTNALLHSSSSIIAPRGDEEGSMGIQQVCAMQSELDEILNVNSNRRMCYIPQEEEEDHQIHDQMADDEFDCLREMNNNNGSKDNNNNSLIWWSNDSSADTKSGSSSSWESMSSTTPVLLPEGMFQDYELGYTL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30874g00001 389 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Stsc30874g00001 389 Gene3D - 7 68 - -
Stsc30874g00001 389 MobiDBLite consensus disorder prediction 194 213 - -
Stsc30874g00001 389 CDD SANT 71 113 IPR001005 -
Stsc30874g00001 389 MobiDBLite consensus disorder prediction 194 215 - -
Stsc30874g00001 389 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Stsc30874g00001 389 MobiDBLite consensus disorder prediction 122 149 - -
Stsc30874g00001 389 MobiDBLite consensus disorder prediction 119 149 - -
Stsc30874g00001 389 PANTHER OS09G0431300 PROTEIN 1 258 - -
Stsc30874g00001 389 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc30874g00001 389 SMART sant 13 64 IPR001005 -
Stsc30874g00001 389 SMART sant 67 115 IPR001005 -
Stsc30874g00001 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Stsc30874g00001 389 CDD SANT 16 62 IPR001005 -
Stsc30874g00001 389 FunFam Transcription factor RAX3 7 68 - -
Stsc30874g00001 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc30874g00001 389 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Stsc30874g00001 389 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Stsc30874g00001 389 Gene3D - 70 143 - -
Stsc30874g00001 389 FunFam Transcription factor MYB36 70 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30874g00001 Stsc-Chr30874 915 2812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30874g00001 1 203 MYB Transcription Factor Family AT5G57620 74.634 5.90e-103 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30874g00001 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30874g00001 K09422 - gmx:778083 436.802