Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30862g00001 CAACACTACAGTCCCTACATATGTAAGCATCTCATTCTAAGAAGCCCACGCAGCCCAGTGTTTCACTTCGCTTCTTCTCAATTGCTTTTAGGGTTCTTCTGCTTCCTCAGTCTCAACCACAGCCACTGTTTGTATTCACACTTTTGGGATATGGATTCATTTGAGCCGGGTGGAAATGGGAACGGTAACGAGTCAGCCTTGCCACCACCACCTCCTGTTGTTCCACCTGATGTTGTCCCGGTTAAAGCAGAGGATGTGCTTCCTGAACCTGTTAAGACAAAGGTTTCCCGTGTTCCAATTGCCAGGCGTGGGTTGGGATCAAAGGGAATGAAGATACCTCTTCAAACCAATCACTTCAAAGTTAACATCACTAACAATGATGGAAGTTTCTTCCATTATAGTGTTGCTTTTGCTTATGAAGATGGACGCCCTGTAGAAGGTAAAGGTTTTGGTAGAAGGATAATGGATAAGGTGCATGAGACATATGCTTCTGAGTTGAATGGTAAAGACTTCGCATATGATGGGGAGAAAAGTCTGTTTACCATTGGTTCTCTTCCTCGCAACAAGCTTGAGTTTGAAGTTGTTCTGGAGGATGTTGTTTCGAACAGAAATAACGGTAATTGTAGCCCTGATGGTCATGGGGACAATGAAAGTGACAAAAAGAGGATGCGACGCCCTTATCGTGCAAAGAAATTTAAAGTAGAAATTAGCTATGCAGCTAAAATTCCAATGCAGGCCATTGGCAATGCCTTGCGTGGGCAGGAATCTGAGAATTTCCAAGAAGCCATCAGAGTGCTTGATATTATCTTGAGGCAGCATGCTGCTAAACAAGGTTGCCTCCTAGTTCGGCAATCGTTCTTCCACAATGATCCAAAGAATTTTGCTGAAGTTGGAGGTGGCGTGCTTGGCTGCAGAGGATTCCATTCAAGTTTCAGAACTACTCAGAGCGGCCTGTCTCTGAACATAGATGTCACAACTACTATGACAATCCAGCCTGGGCCTGTTGTTGATTTCCTAATTGCTAATCAAAATGTGCGAGATCCATTTCAGCTTGACTGGGCAAAGGCCAAAAGGACCCTAAAAAATCTGAGGATCAAAGTTAGCCCATCCAATCAAGAGTACAAAATTACGGGCCTCAGTGAACTCCCATGCCGAGATCAGACGTTTTCTCTGAAGAAAGGTGGTACTGATGATACTGAAGAAGTGACTGTTTATGATTATTTTGTCAATGCTCGTAAGATAGATCTTCGCTACTCCGCTGAGCTTCCTTGTATCAATGTTGGCAAGCCTAAGCGACCAACATATTTTCCCATTGAGCTTTGTGAATTGGTGTCCTTGCAACGTTATACAAAAGCACTGTCCACCCTTCAAAGGGCTTCATTGGTAGAGAAGTCCAGGCAGAAGCCACCGGAGAGGATGAGGGTCTTAACTGATGCACTAAAAACCAGCAACTATGGTTCTGAACCTATGCTTCAAAGTTGTGGAATTTCCATAAGCACTGGTTTTACTCAAGTGGATGGTCGTGTTCTGCCTTCACCAAGGTTGAAACTTGGCAAAGGTGAGGACTTAAATCCAAGGAATGGGAGATGGAATTTTAGTAATAAGAGTTTTGTGCAGCCAACAAAGATAGAACGATGGGCTGTAGCTAACTTTTCTGCACGCTGTGATGCAAGAGCTGTTGTGAGGGATATGATTAGAGTTGCAGCAACAAAAGGAATTATGATGGATGATCCATATGATGTGTTTGAAGAGAATCATCAGTTTAGGCGCTCCCCACCAATGGTTAGAGTGGAGAAGATGTTTGAAACCATCCAGTCTAAACTTCCTGGAGTTCCTCAGTTCCTTCTATGTCTAATTCCCGAGAGGAAAAACTGTGAAATTTATGGTCCATGGAAAAAGAAGAATCTGACCGAGTATGGAATTGCTAGCCAGTGCATGTGTCCCATAAAGGTCAATGACCAGTTTCTGACTAATGTTTTGATGAAGATAAATGCTAAGCTTGGTGGATTGAATACATTACTAGGCGTTGAACATTCTCCATCTCTTCCGGTTGTCTCAAAAGCACCCACGCTTATATTGGGCATGGATGTTTCGCATGGCTCCCCAGGGCAATCTGATATTCCTTCAATTGCAGCGGTGGTCAGCTCTAGACAATGGCCTCTTATATCTAAGTATAGAGCCTGTGTTCGTACCCAGTCTGCAAAGCTTGAGATGATAGATAATTTGTTCAAGAAAGTATCTGACAATGATGATGAAGGAATTATAAGGGAACTTCTACTTGATTTCTATGTTAGTTCAGGGAAGAGGAAACCAGACAATATAATTATATTCAGGGATGGTGTTAGTGAATCACAGTTCAATCAAGTTTTGAACAAAGAACTTGATCAAATCATCGAGGCATGTAAGTTCCTTGATGAAAAGTGGGAGCCCAAGTTTGTGGTTATAGTTGCTCAGAAGAACCACCACACAAGATTCTTCCAGTCTGGTGCTCCTGAGAATGTCCCACCTGGAACTATTGTTGACAACAAAATTTGTCATCCAAGAAACTATGATTTCTACCTATGTGCACATGCTGGAATGATTGGCACTAGCAGGCCTACACACTACCATGTTCTGCATGATGAGGTTGGTTTTAGTGCTGATGAGCTACAGGAGCTTGTACATTCTCTTTCATATGTGTATCAGAGAAGCACTACATCCATTTCTGTTGTTGCTCCAATATGCTATGCACACTTGGCTGCGACCCAGGTGGGCCACTTCCTCAAATGTGAAGACAAATCTGAGACATCTTCAAGTCATGGTGGACTGAGTTCTGCTGGAGCTGTCCCTGTCCCGCAGTTGCCCAAACTGCAAGACAGTGTTTCCAACTCAATGTTCTTCTGCTGA 2886 0.4328 QHYSPYICKHLILRSPRSPVFHFASSQLLLGFFCFLSLNHSHCLYSHFWDMDSFEPGGNGNGNESALPPPPPVVPPDVVPVKAEDVLPEPVKTKVSRVPIARRGLGSKGMKIPLQTNHFKVNITNNDGSFFHYSVAFAYEDGRPVEGKGFGRRIMDKVHETYASELNGKDFAYDGEKSLFTIGSLPRNKLEFEVVLEDVVSNRNNGNCSPDGHGDNESDKKRMRRPYRAKKFKVEISYAAKIPMQAIGNALRGQESENFQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFAEVGGGVLGCRGFHSSFRTTQSGLSLNIDVTTTMTIQPGPVVDFLIANQNVRDPFQLDWAKAKRTLKNLRIKVSPSNQEYKITGLSELPCRDQTFSLKKGGTDDTEEVTVYDYFVNARKIDLRYSAELPCINVGKPKRPTYFPIELCELVSLQRYTKALSTLQRASLVEKSRQKPPERMRVLTDALKTSNYGSEPMLQSCGISISTGFTQVDGRVLPSPRLKLGKGEDLNPRNGRWNFSNKSFVQPTKIERWAVANFSARCDARAVVRDMIRVAATKGIMMDDPYDVFEENHQFRRSPPMVRVEKMFETIQSKLPGVPQFLLCLIPERKNCEIYGPWKKKNLTEYGIASQCMCPIKVNDQFLTNVLMKINAKLGGLNTLLGVEHSPSLPVVSKAPTLILGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYRACVRTQSAKLEMIDNLFKKVSDNDDEGIIRELLLDFYVSSGKRKPDNIIIFRDGVSESQFNQVLNKELDQIIEACKFLDEKWEPKFVVIVAQKNHHTRFFQSGAPENVPPGTIVDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLHDEVGFSADELQELVHSLSYVYQRSTTSISVVAPICYAHLAATQVGHFLKCEDKSETSSSHGGLSSAGAVPVPQLPKLQDSVSNSMFFC 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30862g00001 961 SUPERFAMILY PAZ domain 327 485 IPR036085 GO:0005515
Stsc30862g00001 961 ProSiteProfiles Piwi domain profile. 614 922 IPR003165 GO:0003676
Stsc30862g00001 961 SUPERFAMILY Ribonuclease H-like 598 920 IPR012337 -
Stsc30862g00001 961 Gene3D - 509 675 - -
Stsc30862g00001 961 FunFam Protein argonaute 3 682 961 - -
Stsc30862g00001 961 Pfam Mid domain of argonaute 524 567 IPR032473 -
Stsc30862g00001 961 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 90 924 - -
Stsc30862g00001 961 MobiDBLite consensus disorder prediction 203 223 - -
Stsc30862g00001 961 Gene3D paz domain 326 449 - -
Stsc30862g00001 961 CDD Piwi_ago-like 489 921 IPR045246 -
Stsc30862g00001 961 Pfam Piwi domain 615 921 IPR003165 GO:0003676
Stsc30862g00001 961 ProSiteProfiles PAZ domain profile. 374 445 IPR003100 GO:0005515
Stsc30862g00001 961 Pfam PAZ domain 336 461 IPR003100 GO:0005515
Stsc30862g00001 961 SMART DUF1785_2 280 332 IPR014811 -
Stsc30862g00001 961 Pfam Argonaute linker 1 domain 282 329 IPR014811 -
Stsc30862g00001 961 CDD PAZ_argonaute_like 332 444 - -
Stsc30862g00001 961 FunFam Protein argonaute 7 327 449 - -
Stsc30862g00001 961 Pfam N-terminal domain of argonaute 111 270 IPR032474 -
Stsc30862g00001 961 Pfam Argonaute linker 2 domain 471 516 IPR032472 -
Stsc30862g00001 961 Coils Coil 787 807 - -
Stsc30862g00001 961 SMART Piwi_a_2 614 922 IPR003165 GO:0003676
Stsc30862g00001 961 Gene3D - 681 961 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30862g00001 Stsc-Chr30862 9280 17064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30862g00001 83 961 Eukaryotic Initiation Factors Gene Family AT1G48410 35.484 5.50e-166 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30862g00001 K11593 - gmx:100820376 1538.09