Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30857g00001 ATGAATCGAAGAACAATGGAAGAAGAAGATTATAATCAAGAACAGAACATCAACAAGAAGAACAAGCATGTCTGCAAGTTCTGCAGCAGGAGCTTCCCTTGTGGTAGATCCTTGGGTGGTCACATGAGGTCTCATGTCATCAATGGTGACATAGATCATCATCACCATGACAATAACAAGCTTCTTGCATCATCATCATCATCAACAACAGCAGAAAAAATTAAGAAGATGCTTTTATCTTCTTCATCTATAGAAAACAACACAGGAACAGGAATAGGTTCTGAAGGTTATGGTCTGAGAGAGAATCCCAAGAAGACATGGAGGCTCACTGATTCAACAAGTGAAGACACTTCTCTGCTCTTCTGCAAAGATTGTGGTAAAGGTTTTCAGTCATGGAGAGCACTATTCGGCCACATGAAGTGTCATTCTTCTGAGAAAGTAGAGAGCATGGAGTGTGATCAAGATTTCTCATGGACTAGTAGCCATTCTGATAATGAAGAAGCTAATGCTCCAAGCAGAAGGAGAAGATCCAAGAGAACAAGAACAAGGTACATAGCACCATCAGCACCAGCAGCAACAACTGATTCTTCTGTTTCTGAGGCTGATGAGCATGAACAAGAAGAAGTTGCTATGAGCTTGATGATGCTTAGCAGGGATTTGAGTCCATGGTGTGGTGTCAATTCTGTTTCTGAGTCCTCTAAGATTGATATCTACAAGAAGAACAAGAACAAGAAGCTTGTCAATATTGGTTCTGAGTTTGCAAAACTAGGCAGCTATCTGAATTCTTCAAATCTAAGCTTCAAAGGGAAGAAAAGTTCAGAATTTTTTGCAACTGAGAGTGCCAAAGGAGTTAAGCTGATGAACAACACCACAGTTTCAGTTAATGGTTTCAGCAAGAAAAAGTGTGAGGTTGATTCTGAGTCTGCATTTGATAAGTACAGTTCAATGAAGGCAAAGTTTTGGGATTCTGGATCAACAAAGTCTAATTGGGTGAACAAAAAGCCTAATTCAGATGCTGAATTCAGCATCAAGAGCACTACTCATAACCATAAGAGAGGAAAATTTGAGTGTACAACCTGCAACAAGATCTTCCATTCATACCAAGCTCTTGGGGGTCACAGAGCAAGTCACAAGAAGATCAAAGGTTGTTCTTTTGCTTCAAGGAACAATAATGATCTGAGCAGTGAGAACAGCATTGAATTTGAAGGTGAAGCAGAACATGAAGAAGCACCACCACCACCATCACCATCACCCACCCCCACTGACATGAAGAAGTGTGAATATGCTGCAGCACAAGAAGTAGATGAATTTGGTAATAATGGTAATGGTTTTGAGAGAGAATCCAAGAAGGGAAACAACAACAACAACAACAAGGGACATGAGTGTCCAATTTGCTTAAAGGTATTTTCATCTGGACAAGCATTGGGTGGACACAAGAGGTCCCATATGGCTTCTGCTTCTGCTTCTGAGAGTGGGAACTTTCGTCAAACAGTTGTACTACAAGAATCTTCAGTGCCTGAGATTAGGGACTTGCTTGATCTCAATCTTCCTGTTGCTGTTGCTGAGGAGGATGATGAAGATGAAGAAATCAATGGCCATCATGCTTCTGATTCATACACTACTTGGTGGGAAAATCACAAGCAGGAGGCATTGGGATATGCTTAA 1665 0.409 MNRRTMEEEDYNQEQNINKKNKHVCKFCSRSFPCGRSLGGHMRSHVINGDIDHHHHDNNKLLASSSSSTTAEKIKKMLLSSSSIENNTGTGIGSEGYGLRENPKKTWRLTDSTSEDTSLLFCKDCGKGFQSWRALFGHMKCHSSEKVESMECDQDFSWTSSHSDNEEANAPSRRRRSKRTRTRYIAPSAPAATTDSSVSEADEHEQEEVAMSLMMLSRDLSPWCGVNSVSESSKIDIYKKNKNKKLVNIGSEFAKLGSYLNSSNLSFKGKKSSEFFATESAKGVKLMNNTTVSVNGFSKKKCEVDSESAFDKYSSMKAKFWDSGSTKSNWVNKKPNSDAEFSIKSTTHNHKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCSFASRNNNDLSSENSIEFEGEAEHEEAPPPPSPSPTPTDMKKCEYAAAQEVDEFGNNGNGFERESKKGNNNNNNKGHECPICLKVFSSGQALGGHKRSHMASASASESGNFRQTVVLQESSVPEIRDLLDLNLPVAVAEEDDEDEEINGHHASDSYTTWWENHKQEALGYA 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30857g00001 554 Pfam C2H2-type zinc finger 122 144 - -
Stsc30857g00001 554 Pfam C2H2-type zinc finger 460 484 - -
Stsc30857g00001 554 Pfam C2H2-type zinc finger 355 379 - -
Stsc30857g00001 554 Pfam C2H2-type zinc finger 23 45 - -
Stsc30857g00001 554 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 15 542 - -
Stsc30857g00001 554 MobiDBLite consensus disorder prediction 156 203 - -
Stsc30857g00001 554 ProSitePatterns Zinc finger C2H2 type domain signature. 122 142 IPR013087 -
Stsc30857g00001 554 ProSitePatterns Zinc finger C2H2 type domain signature. 357 377 IPR013087 -
Stsc30857g00001 554 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 147 IPR013087 -
Stsc30857g00001 554 SMART c2h2final6 120 142 IPR013087 -
Stsc30857g00001 554 SMART c2h2final6 23 45 IPR013087 -
Stsc30857g00001 554 SMART c2h2final6 355 377 IPR013087 -
Stsc30857g00001 554 SMART c2h2final6 460 482 IPR013087 -
Stsc30857g00001 554 MobiDBLite consensus disorder prediction 400 423 - -
Stsc30857g00001 554 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 45 IPR013087 -
Stsc30857g00001 554 ProSiteProfiles Zinc finger C2H2 type domain profile. 355 382 IPR013087 -
Stsc30857g00001 554 MobiDBLite consensus disorder prediction 437 456 - -
Stsc30857g00001 554 ProSiteProfiles Zinc finger C2H2 type domain profile. 460 487 IPR013087 -
Stsc30857g00001 554 SUPERFAMILY beta-beta-alpha zinc fingers 120 147 IPR036236 -
Stsc30857g00001 554 SUPERFAMILY beta-beta-alpha zinc fingers 20 46 IPR036236 -
Stsc30857g00001 554 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Stsc30857g00001 554 SUPERFAMILY beta-beta-alpha zinc fingers 355 482 IPR036236 -
Stsc30857g00001 554 ProSitePatterns Zinc finger C2H2 type domain signature. 462 482 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30857g00001 Stsc-Chr30857 8484 10844 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30857g00001 352 525 C2H2 Transcription Factor Family AT2G45120 36.207 1.82e-22 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc30857g00001 zf-C2H2_6 2.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30857g00001 - - adu:107463637 781.171