Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30856g00007 CTTAATAGATGTGGTAAGAGCTGTAGGCTTAGGTGGGTCAACTATTTGAGGCCTGATATTAAGAGGGGCGAATTCTCCCAAGAGGAAGAACAAACCATTATACATCTTCATTCCATTCTTGGAAACAAATGGTCAAGAATTGCATCCCATCTTCCAGGGAGGACTGATAATGACATAAAGAATTTCTGGAACACTCGTGCGAAGAAGAAGCTGATTCAGATGAGTCTTGATCCAGTGACGATGATGGATCCTCCGTCATCAGTGGTTGAACGGACTCTGAGGTTACAAGCAGAATTAGCAGCTGAGCTGGCAAAGCTTCGAGACCTTCAAAATCAATCATGGAACGTGAATAGCAGCGTCATCACAAACTTGCCACCACAATTGGACATTCATAATAATCCAGGAGTAGCCTCTTTTTCTGATGGGATGATTATTGATGATAGCTTCCAAACACTGGACCTTCTTCCAGACATGCCATCTCACTTTTTTGACCTACCACAAGAAGGTGAAGGTACTACTACGTATACTATTATTAATAATCATGATTCCTCGTGGATTATTATTCCACCTCCTCCTCCATCAATGGCTCCAGATGTGGTGTGA 603 0.4245 LNRCGKSCRLRWVNYLRPDIKRGEFSQEEEQTIIHLHSILGNKWSRIASHLPGRTDNDIKNFWNTRAKKKLIQMSLDPVTMMDPPSSVVERTLRLQAELAAELAKLRDLQNQSWNVNSSVITNLPPQLDIHNNPGVASFSDGMIIDDSFQTLDLLPDMPSHFFDLPQEGEGTTTYTIINNHDSSWIIIPPPPPSMAPDVV 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30856g00007 200 FunFam MYB transcription factor 24 71 - -
Stsc30856g00007 200 SUPERFAMILY Homeodomain-like 2 75 IPR009057 -
Stsc30856g00007 200 CDD SANT 24 65 IPR001005 -
Stsc30856g00007 200 Gene3D - 1 21 - -
Stsc30856g00007 200 Gene3D - 24 71 - -
Stsc30856g00007 200 Coils Coil 92 112 - -
Stsc30856g00007 200 Pfam Myb-like DNA-binding domain 22 65 IPR001005 -
Stsc30856g00007 200 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 113 - -
Stsc30856g00007 200 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 71 IPR017930 -
Stsc30856g00007 200 ProSiteProfiles Myb-like domain profile. 17 67 IPR001005 -
Stsc30856g00007 200 SMART sant 21 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30856g00007 Stsc-Chr30856 31412 32126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30856g00007 1 160 MYB Transcription Factor Family AT1G34670 51.136 3.79e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc30856g00007 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30856g00007 K09422 - twl:120011695 160.614