Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30854g00004 ATGGCAAAGTGGAAGTGCTTGTTTGGATGGGTAAGAAGGTTCTTCATCACTTCAGAGCCAAAGGAAAATGTAAGAAAACTCTGCAACAACAATGCTTCATCTAAGTATGAAATGCCAAAGAAATTGGGATGGAGGGGATGGAGTCTTGGAAGGTTTAAGTTGAAACCTCACAAGGCAATTACAGGTGCTAGTACAACATTAATGGATGCAAAAACCAAGCAGAGAGATCATGCTTTAGCCATGGCTATTGCAACAGCAGCAGCTGCAGAGGCTGCAGTTGCAGCTGCCAACGCTGCTGCTGAGGTTGTCCGGCTCACCGGCTTCTCTTCTTCCAATTCATCTTTGTCAAGGAGAGATCAAATCTCTGCTGCAATCAAGATTCAAAGCGCATACCGTGCTCATCTTGCAAGGAAAGCATTAAGCGCAATGAAGGGAGTTGTAATATTGCAAGCTATAGTTCGCGGTCAAGTTGTGAGGCGTCGACTGTCCAATACTCGGAAGAAGTTACCTTCCAATGCAAGAAACATGGCAGAAGTCCAGGAAGGAAGCAGCCTTAGTGATGGTGACAGCTACAGAAGTGACTCAATCAAGCAATTTGCAAAGCAAAAAAAGAAGTTGGAAGAGAAGGTATTGAGGTTACAGGCTGAATATTGTAGCAGTCAAAGAACCTGGGATTGTAGCTCTCACTCAAGAGAAGACATTGAAGCCATATGGTTAAGAAAAGAAGAGGCCATCATCAAAAGAGAACGCATGAAGCAGTTCTCTTCTTCACACAGGCTAATAATCTCATCATCACCTCTTCCTTTAAGCTTGATCAACAAGGAACAAGAACTGATGATTAGTTCACCAGTTTCGCTTTCGCGGCGATCATTTTCACATCATGGAAACAGAAGTTCGGTTGTGGATGAAAATTCCATGCCAAATTCACCAGTTTTTCTTCCACCATACATGGCTCTGACAGAATCAAGCAGAGCAAAAGCAAGGTCATTGAGCACACCAAGGGAAAGAACAAGGTTTCTTGAAGATGTTTGCTATGATGATGCAGTTACCATTTGCAGTGAAAACATTGAAGCTTCTCAGAAGAGGAGCAAGAGTGCTAAATAA 1104 0.4303 MAKWKCLFGWVRRFFITSEPKENVRKLCNNNASSKYEMPKKLGWRGWSLGRFKLKPHKAITGASTTLMDAKTKQRDHALAMAIATAAAAEAAVAAANAAAEVVRLTGFSSSNSSLSRRDQISAAIKIQSAYRAHLARKALSAMKGVVILQAIVRGQVVRRRLSNTRKKLPSNARNMAEVQEGSSLSDGDSYRSDSIKQFAKQKKKLEEKVLRLQAEYCSSQRTWDCSSHSREDIEAIWLRKEEAIIKRERMKQFSSSHRLIISSSPLPLSLINKEQELMISSPVSLSRRSFSHHGNRSSVVDENSMPNSPVFLPPYMALTESSRAKARSLSTPRERTRFLEDVCYDDAVTICSENIEASQKRSKSAK 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30854g00004 367 Gene3D - 119 169 - -
Stsc30854g00004 367 Pfam Protein of unknown function (DUF4005) 302 337 IPR025064 -
Stsc30854g00004 367 Coils Coil 196 216 - -
Stsc30854g00004 367 MobiDBLite consensus disorder prediction 164 190 - -
Stsc30854g00004 367 MobiDBLite consensus disorder prediction 168 190 - -
Stsc30854g00004 367 Pfam IQ calmodulin-binding motif 122 139 IPR000048 GO:0005515
Stsc30854g00004 367 Pfam IQ calmodulin-binding motif 144 162 IPR000048 GO:0005515
Stsc30854g00004 367 ProSiteProfiles IQ motif profile. 120 144 IPR000048 GO:0005515
Stsc30854g00004 367 ProSiteProfiles IQ motif profile. 142 171 IPR000048 GO:0005515
Stsc30854g00004 367 SMART iq_5 144 163 IPR000048 GO:0005515
Stsc30854g00004 367 SMART iq_5 119 141 IPR000048 GO:0005515
Stsc30854g00004 367 PANTHER IQ-DOMAIN 5-RELATED 10 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30854g00004 Stsc-Chr30854 24773 26505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30854g00004 1 347 IQD Protein Family AT5G03960 37.374 2.44e-41 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30854g00004 - - gmx:100800767 253.832