Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30849g00002 ATGCCTCTAGTTTCTTCTCTTTTCTCTTTTGATCCATTAACACAGCAACTACAACAACAACAACAACATCCTCAAAACATGTATTTCGCTAAATTACAGGATTCTCCCATGTTCCGCCAACAGCTGCAGAACATGGAAGAAGGTGCAGAATCGTTACGCACCAGATGCTGGAGATTCTACAAAGGGTGTAAAAAGTACACGGATGGTCTTTTAGATGCATGTGATGGAGACTTCAGCTTCGCAAGTGCCCTCGAAAATTTTGGGGGAGAACATTCTGATCCTTTATTTGTAACTTTGGGAGGGCCTGTTATGACCAAATTCTCTATGGCTTTGAGAGAAATCGGTACATACAAGGACTGTCTTAGGGCACAGGTGGAGCAGATGTTGACTGACCGACTACTTCACATTTACAACGTTGAAATAATGGATGTCAAGGAAGCTCGAAAGCGTTTTGACAAGGCTTGCATTGCATATGACCAGGCACGGGAGAAGTTTATGTCATTGAGAAAAAGTACTAGGCAGGATATCGTCATTGCAATAGAGGAGATTAGTGCTCTTCACAATGTCGAGGCCAAAAAAAGATTTGAGTTTTTGGAGGCTGTCACTGGAGTAATGGATGCTCATCTTCAATACTTTCGACAGGGATATGAACTACTACATCAGTTGGAGCCTTTCATTGTTGAGGTTTTGTCTTATGTACAAAAAGCAAGGGAAAGTCACAATGAGGAGCAGGTTTCTCTATTTGAAAGAATGATAGAGTACAAGCAACTTGTTCATCAGCAAAGTAAGTTCTCCTTGAAGGGATTTTATGATTCTCCTACTGGAGACTCTCCATTTTCTAGGATATCAAATGATGTGTTAGATGCAGTATCAGAATCTGTTACAAATGGAAAGGGTCTAAATTCACAGAAGTGTCATACGTTTGATAATTCTTCTGGCATTTTGAGTCGGTTGTTATCTTCACATCATGGAGTCAATGATGAAAAGCCGGTTGCTCGTCATACGGTGAACCTGCTCACATCAACAATCAAGGTTGATGCGGAACAGACAGATTTGAGATTCTGCTTTAGGATTGTTTCTCCATCAAAGGTTTTTACATTGCAGGCAGAAAATGCCTTAGACCAAAGGGATTGGATGGAAAAGATAACTGGAGTAATTGCATCATTGTTAACAATACAAACACTGGGAAAGCCTGTCATTACTGGCTCAGAAGGTGTTGACTGGGATACTGGCAGCACACCTGATTCAATACAAAGTTCTTCTGATGAGGAAATTGCAGTAAGTGCAGGTTTGGCATGCAAGATCATCAACACTAACAGGTCACCTAGTGGCTTGCAACGGCATAAACACAGTATAAAATGTGAGAAGCCAATCGATGTTCTTCGAAGGGTTAATGGGAATGATAAATGTGCTGATTGTGGTAAATCTGAACCAGACTGGGCATCCTTAAACCTTGGCATCCTTGTATGCATTGAATGCTCTGGTGTTCATCGAAATCTTGGTGTACATATATCCAAAGTAAGATCACTAACACTTGATGTGAAAGTATGGGATTCCTCAGTTTTAAGCATGTTTCAATCACTTGGCAATCTCTTTGCAAACTCAGTTTGGGAGGATTTATTGCATTCAAAAGCTTCAAAAGATGAAACTCTTGATGGATCATCCAAGAGCACCAAAACCAAGTTATTTCATGCAAGAAAACCTGCATACGATGATCCCATTTCGCTAAAGGAGAGGTTCATTCATGCAAAGTATTCTGAGAGAATCTTTGTTCGCCAAACACCGAACAATCGTCTCCGTACAGTGGCACAACTGGTCTGGGAAAGCGTCTTTGCCAATGACAAGAAATCAGTGTACCGGCATATTGTGAGATCCGACGTGGATGTCAATGCTTTAAATGGTCAAAAATTTGATGGAAATTCTCTCGCCATGCCTTCTTCGAGTAACTCAAGCATGTCATCTGTAACTGAAGACCAACTAAGGGAGGACATAAAAGATGGCTCAAGTGTGCTTCACTTGGCATGCCTTGTATGTGATGCTGGAATGTTGGAGCTGCTCCTACAACACGGTGCAGATATAAATGCCATCGATTCGATTGGTCGAACACCATTACATTACTGCATGCTTAGAGGGAGGATTGCAACCGCAAAATTGCTTATTTTAAGGGGGGCCAATACACATGCAGTAGATAAACAAGGCAAGACTCCTCTCATGCTTGCATCAGAACCTAGCAGTGAAATTGTTGCTCTCTTATCAAGCAGATGA 2265 0.4137 MPLVSSLFSFDPLTQQLQQQQQHPQNMYFAKLQDSPMFRQQLQNMEEGAESLRTRCWRFYKGCKKYTDGLLDACDGDFSFASALENFGGEHSDPLFVTLGGPVMTKFSMALREIGTYKDCLRAQVEQMLTDRLLHIYNVEIMDVKEARKRFDKACIAYDQAREKFMSLRKSTRQDIVIAIEEISALHNVEAKKRFEFLEAVTGVMDAHLQYFRQGYELLHQLEPFIVEVLSYVQKARESHNEEQVSLFERMIEYKQLVHQQSKFSLKGFYDSPTGDSPFSRISNDVLDAVSESVTNGKGLNSQKCHTFDNSSGILSRLLSSHHGVNDEKPVARHTVNLLTSTIKVDAEQTDLRFCFRIVSPSKVFTLQAENALDQRDWMEKITGVIASLLTIQTLGKPVITGSEGVDWDTGSTPDSIQSSSDEEIAVSAGLACKIINTNRSPSGLQRHKHSIKCEKPIDVLRRVNGNDKCADCGKSEPDWASLNLGILVCIECSGVHRNLGVHISKVRSLTLDVKVWDSSVLSMFQSLGNLFANSVWEDLLHSKASKDETLDGSSKSTKTKLFHARKPAYDDPISLKERFIHAKYSERIFVRQTPNNRLRTVAQLVWESVFANDKKSVYRHIVRSDVDVNALNGQKFDGNSLAMPSSSNSSMSSVTEDQLREDIKDGSSVLHLACLVCDAGMLELLLQHGADINAIDSIGRTPLHYCMLRGRIATAKLLILRGANTHAVDKQGKTPLMLASEPSSEIVALLSSR 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30849g00002 754 SMART 5bar 26 228 IPR004148 GO:0005515|GO:0005737
Stsc30849g00002 754 Pfam Ankyrin repeats (3 copies) 671 752 IPR002110 GO:0005515
Stsc30849g00002 754 ProSiteProfiles Ankyrin repeat profile. 666 698 IPR002110 GO:0005515
Stsc30849g00002 754 SUPERFAMILY Ankyrin repeat 665 751 IPR036770 -
Stsc30849g00002 754 Coils Coil 144 164 - -
Stsc30849g00002 754 Gene3D Arfaptin homology (AH) domain/BAR domain 30 260 IPR027267 -
Stsc30849g00002 754 Pfam Putative GTPase activating protein for Arf 458 592 IPR001164 GO:0005096
Stsc30849g00002 754 CDD ArfGap 458 585 - -
Stsc30849g00002 754 PANTHER CENTAURIN/ARF 30 752 IPR045258 GO:0005096
Stsc30849g00002 754 Gene3D Arf GTPase activating protein 437 598 IPR038508 -
Stsc30849g00002 754 SUPERFAMILY BAR/IMD domain-like 32 251 IPR027267 -
Stsc30849g00002 754 SUPERFAMILY ArfGap/RecO-like zinc finger 455 593 IPR037278 -
Stsc30849g00002 754 ProSiteProfiles Ankyrin repeat region circular profile. 699 731 - -
Stsc30849g00002 754 SMART ANK_2a 666 695 IPR002110 GO:0005515
Stsc30849g00002 754 SMART ANK_2a 699 728 IPR002110 GO:0005515
Stsc30849g00002 754 SMART PH_update 224 389 IPR001849 -
Stsc30849g00002 754 ProSiteProfiles Ankyrin repeat region circular profile. 666 697 - -
Stsc30849g00002 754 Gene3D - 606 754 IPR036770 -
Stsc30849g00002 754 ProSiteProfiles Ankyrin repeat profile. 699 731 IPR002110 GO:0005515
Stsc30849g00002 754 PRINTS HIV Rev interacting protein signature 509 530 IPR001164 GO:0005096
Stsc30849g00002 754 PRINTS HIV Rev interacting protein signature 467 486 IPR001164 GO:0005096
Stsc30849g00002 754 PRINTS HIV Rev interacting protein signature 486 503 IPR001164 GO:0005096
Stsc30849g00002 754 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 437 599 - -
Stsc30849g00002 754 SUPERFAMILY PH domain-like 322 391 - -
Stsc30849g00002 754 CDD BAR_SFC_plant 41 225 IPR035670 -
Stsc30849g00002 754 Pfam BAR domain of APPL family 32 244 IPR004148 GO:0005515|GO:0005737
Stsc30849g00002 754 ProSiteProfiles PH domain profile. 353 387 IPR001849 -
Stsc30849g00002 754 ProSiteProfiles ARF GTPase-activating proteins domain profile. 455 598 IPR001164 GO:0005096
Stsc30849g00002 754 Gene3D - 304 394 IPR011993 -
Stsc30849g00002 754 SMART arf_gap_3 455 598 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30849g00002 Stsc-Chr30849 20445 28782 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30849g00002 467 602 C2H2 Transcription Factor Family AT4G21160 40.146 1.28e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30849g00002 K12489 - gmx:100797073 879.396