Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30846g00005 ATGAACATGGATGATTTCGGTGATGTTAATGTTAATCGAAACCAAGATTCTGTTCCGAAATTCAAGTCGGTTACACCTCCTTCACTACCTCTTTCTACCTCACAAACTACTTCTTCTTACTTACCTTTTACATCATCACCTTTTAGCCCTACTGAGTTCTTGAACTCATCCTTGTTCCTTTCTTCTCCTAATATTTTTGCATCTCCTACTATTGAGGCTTTTGCTGGCCATGGCTTCAACAACAAGGAGGATAAGAAGAACTTCTCTGAATTCTCTTTCCAAACACAAACTAAGACATCTTCTCCCATTCCAGAAGAACCACTTAACATATGGAAATTCACAGAACCTATAAACCAAACTGAATTTTCATCTCAGAAGGAAGCAACAAAATCTGAATATCCATCAACACAGAGCTTCTCCTCAGAAATGTTAGCAACAAAACCTGAATTACAAAGCAATTCAATGCCTGAGTCCGGTTCTTTCAACTATGCTAACGCGTCTCAGCCCATTAGAGAACAAAGGAGATCAGAAGATGGTTACAATTGGAGGAAATATGGACAGAAACAAGTGAAAGGGAGCGAGAATCCGCGGAGTTATTACAAGTGCACACATCCGAATTGCGCAATGAAGAAAAAAGTTGAGAGGTCTTTGGAGGGACAAATAACTGAGATAGTTTATAAGGGAAGTCATAATCATCCTAAGCCACAGAGTTCTAGAAGAAGCTCAAGTTCTCAGCAAACTGTTCATCAGCAACCTTCTTCATCCTGCACTAACTCGGGGATCTCGGATCAGTCAGTGGTGACACTAGGCAATCCTCAACTTGATCGTGTGTTGATGCAAGAAGATTCCTCGGCTTCCATGGGAGAGGAAGAATTTGAGCAAACTTCTCAAACCAGTTACTCTGGTGGAGATGAAGATGAACTTGGACCAGATGCTAAAAGATGGAAGGGGGAGAATGAACAGGATGGTCATTCAGCCTATGGAACCAGAGCTGTTAGGGAACCTAGAGTTGTAGTCCAAACAACAAGCGAAATCGATATTCTTGATGATGGCTACAGATGGAGGAAATATGGACAGAAGGTAGTTAAGGGAAATCCAAATGCAAGGTAA 1110 0.4117 MNMDDFGDVNVNRNQDSVPKFKSVTPPSLPLSTSQTTSSYLPFTSSPFSPTEFLNSSLFLSSPNIFASPTIEAFAGHGFNNKEDKKNFSEFSFQTQTKTSSPIPEEPLNIWKFTEPINQTEFSSQKEATKSEYPSTQSFSSEMLATKPELQSNSMPESGSFNYANASQPIREQRRSEDGYNWRKYGQKQVKGSENPRSYYKCTHPNCAMKKKVERSLEGQITEIVYKGSHNHPKPQSSRRSSSSQQTVHQQPSSSCTNSGISDQSVVTLGNPQLDRVLMQEDSSASMGEEEFEQTSQTSYSGGDEDELGPDAKRWKGENEQDGHSAYGTRAVREPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNAR 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30846g00005 369 FunFam WRKY transcription factor 165 236 - -
Stsc30846g00005 369 Gene3D WRKY domain 335 369 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30846g00005 369 Pfam WRKY DNA -binding domain 349 369 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30846g00005 369 Pfam WRKY DNA -binding domain 177 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30846g00005 369 MobiDBLite consensus disorder prediction 306 329 - -
Stsc30846g00005 369 MobiDBLite consensus disorder prediction 7 39 - -
Stsc30846g00005 369 MobiDBLite consensus disorder prediction 121 203 - -
Stsc30846g00005 369 Gene3D WRKY domain 163 236 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30846g00005 369 ProSiteProfiles WRKY domain profile. 343 369 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30846g00005 369 MobiDBLite consensus disorder prediction 1 39 - -
Stsc30846g00005 369 MobiDBLite consensus disorder prediction 224 331 - -
Stsc30846g00005 369 MobiDBLite consensus disorder prediction 289 303 - -
Stsc30846g00005 369 MobiDBLite consensus disorder prediction 231 271 - -
Stsc30846g00005 369 MobiDBLite consensus disorder prediction 121 170 - -
Stsc30846g00005 369 ProSiteProfiles WRKY domain profile. 171 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30846g00005 369 SMART WRKY_cls 176 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30846g00005 369 SUPERFAMILY WRKY DNA-binding domain 172 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30846g00005 369 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 71 369 IPR044810 GO:0003700
Stsc30846g00005 369 SUPERFAMILY WRKY DNA-binding domain 340 369 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30846g00005 Stsc-Chr30846 27047 29977 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30846g00005 18 369 WRKY Transcription Factor Family AT2G38470 46.917 5.84e-78 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc30846g00005 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30846g00005 K13424 - gmx:100792833 474.552