Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30846g00004 ATGAACATGGATGATTTCGGTGATGTTAATGTTAATCGAAACCAAGATTCTGTTCCGAAATTCAAGTCGGTTACACCTCCTTCACTACCTCTTTCTACCTCACAAACTACTTCTTCTTACTTACCTTTTACATCATCACCTTTTAGCCCTACTGAGTTCTTGAACTCATCCTTGTTCCTTTCTTCTCCTAATATTTTTGCATCTCCTACTATTGAGGCTTTTGCTGGCCATGGCTTCAACAACAAGGAGGATAAGAAGAACTTCTCTGAATTCTCTTTCCAAACACAAACTAAGACATCTTCTCCCATTCCAGAAGAACCACTTAACATATGGAAATTCACAGAACCTATAAACCAAACTGAATTTTCATCTCAGAAGGAAGCAACAAAATCTGAATATCCATCAACACAGAGCTTCTCCTCAGAAATGTTAGCAACAAAACCTGAATTACAAAGCAATTCAATGCCTGAGTCCGGTTCTTTCAACTATGCTAACGCGTCTCAGCCCATTAGAGAACAAAGGAGATCAGAAGATGGTTACAATTGGAGGAAATATGGACAGAAACAAGTGAAAGGGAGCGAGAATCCGCGGAGTTATTACAAGTGCACACATCCGAATTGCGCAATGAAGAAAAAAGTTGAGAGGTCTTTGGAGGGACAAATAACTGAGATAGTTTATAAGGGAAGTCATAATCATCCTAAGCCACAGAGTTCTAGAAGAAGCTCAAGTTCTCAGCAAACTGTTCATCAGCAACCTTCTTCATCCTGCACTAACTCGGGGATCTCGGATCAGTCAGTGGTGACACTAGGCAATCCTCAACTTGATCGTGTGTTGATGCAAGAAGATTCCTCGGCTTCCATGGGAGAGGAAGAATTTGAGCAAACTTCTCAAACCAGTTACTCTGGTGGAGATGAAGATGAACTTGGACCAGATGCTAAAAGATGGAAGGGGGAGAATGAACAGGATGGTCATTCAGCCTATGGAACCAGAGCTGTTAGGGAACCTAGAGTTGTAGTCCAAACAACAAGCGAAATCGATATTCTTGATGATGGCTACAGATGGAGGAAATATGGACAGAAGGTAGTTAAGGGAAATCCAAATGCAAGGAGTTATTACAAGTGCACAGCCCCTGGTTGTTCGGTTAGGAAACATGTCGAGCGAGCCGCAAATGATATAAAATCAGTGATCACAACTTATGAAGGGAAACACAACCATGATGTGCCTGCAGCGCGCGGCAGCGCCGGTTACAACATGAACAGAAGTTCTCTAAACAGAAACAATAGCAATGCACCAGCGCTGATAAGGCCTGCGGCAGTGAATGGTTATTCTAGCACGCCAAGTTTCACGAATTCACTTTACAATCCTAGCCTTCCGGCAACCGGAAGTCAAGAATCATCTTCCCTAGACATGCTGCAAGGCTCTGGAATTTTTGGCTACTCATCTCTTGGAAGATCAATGGGTTCATATGACAACAATTCGCAATTTTCAGATGGTGCATACATTAAGGCCAAGGATGAAAGGAAGGATAACTCATTCCTTGAGTCATTTCTTTCAAAGAATTAA 1563 0.421 MNMDDFGDVNVNRNQDSVPKFKSVTPPSLPLSTSQTTSSYLPFTSSPFSPTEFLNSSLFLSSPNIFASPTIEAFAGHGFNNKEDKKNFSEFSFQTQTKTSSPIPEEPLNIWKFTEPINQTEFSSQKEATKSEYPSTQSFSSEMLATKPELQSNSMPESGSFNYANASQPIREQRRSEDGYNWRKYGQKQVKGSENPRSYYKCTHPNCAMKKKVERSLEGQITEIVYKGSHNHPKPQSSRRSSSSQQTVHQQPSSSCTNSGISDQSVVTLGNPQLDRVLMQEDSSASMGEEEFEQTSQTSYSGGDEDELGPDAKRWKGENEQDGHSAYGTRAVREPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNARSYYKCTAPGCSVRKHVERAANDIKSVITTYEGKHNHDVPAARGSAGYNMNRSSLNRNNSNAPALIRPAAVNGYSSTPSFTNSLYNPSLPATGSQESSSLDMLQGSGIFGYSSLGRSMGSYDNNSQFSDGAYIKAKDERKDNSFLESFLSKN 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30846g00004 520 MobiDBLite consensus disorder prediction 403 429 - -
Stsc30846g00004 520 MobiDBLite consensus disorder prediction 415 429 - -
Stsc30846g00004 520 MobiDBLite consensus disorder prediction 7 39 - -
Stsc30846g00004 520 MobiDBLite consensus disorder prediction 121 203 - -
Stsc30846g00004 520 FunFam WRKY transcription factor 165 236 - -
Stsc30846g00004 520 MobiDBLite consensus disorder prediction 1 39 - -
Stsc30846g00004 520 MobiDBLite consensus disorder prediction 224 269 - -
Stsc30846g00004 520 MobiDBLite consensus disorder prediction 289 303 - -
Stsc30846g00004 520 SUPERFAMILY WRKY DNA-binding domain 172 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30846g00004 520 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 71 427 IPR044810 GO:0003700
Stsc30846g00004 520 MobiDBLite consensus disorder prediction 121 170 - -
Stsc30846g00004 520 FunFam WRKY transcription factor 33 335 401 - -
Stsc30846g00004 520 SMART WRKY_cls 348 407 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30846g00004 520 SMART WRKY_cls 176 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30846g00004 520 MobiDBLite consensus disorder prediction 231 269 - -
Stsc30846g00004 520 ProSiteProfiles WRKY domain profile. 171 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30846g00004 520 Pfam WRKY DNA -binding domain 177 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30846g00004 520 Pfam WRKY DNA -binding domain 349 405 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30846g00004 520 ProSiteProfiles WRKY domain profile. 343 408 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc30846g00004 520 MobiDBLite consensus disorder prediction 282 327 - -
Stsc30846g00004 520 SUPERFAMILY WRKY DNA-binding domain 340 408 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30846g00004 520 Gene3D WRKY domain 333 409 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30846g00004 520 Gene3D WRKY domain 163 236 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc30846g00004 520 MobiDBLite consensus disorder prediction 306 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30846g00004 Stsc-Chr30846 27047 29977 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30846g00004 18 517 WRKY Transcription Factor Family AT2G38470 46.110 1.01e-116 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc30846g00004 WRKY 8.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30846g00004 K13424 - gmx:100776837 678.707