Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30844g00003 ATGGGTTTGGATTCATTACCAGCTTCAACAGTCTCTGAGCTCTCCTCGACTTCGCTATACGGATCCAACTCTCTTGGATCTTCTCATTGTCAAGATGGTTCTCTGCATTGCATGGCTGACTCTTGCCCTGTGGACTGCATTAACATGCCACTTAAGCTGGAGAAGTCTTCTTCAGGAGCCATGAAATCAAAGGCTCAGAAAGTTGGAAACTTGCCGGCACTAAGGAGATTTCAAAATGAGACATTGCCTCCAAAGTCAGCTAAACCGATTCCAGTTACTCACAACAAACTTTTGTCTCCTATCAAGAACCCTGGTTATGTTCAACCTAGGAATGTGGCTCAGATAATGGATGCGGCTACTAAGATAATTGAGGCAAGTCCTCTGCAATATGCAAGGAATGGAATGTCTTCAGTTGGGCCTTCATCTGTTCCCTTGAGAATTCTTGATCTGAAAGAGCAATTGGAAGGGGCACATTATGAATCCAAGCTTGTCAATCGGCACATTGCTAACCCTGTGAATGGTAAGCCTAATGAGAAGAGCAGTTTGTATAAAGGAACTCTAACATTCAAGCGTTTAGGGGATTCAGAAAAGAACAGTTCTAGTTATTTAGGAATTAAAGGAAAATCTGCTTCAGTTGCAATACCATCCAAAGCCGATGTTCAGAGCCGAGATACATCAACTTTGAAAGGTAAAAAGAGACATATTAACCTGAAAGAAGACAATAAGACAAAACCAAACCAGCCATCCCGGAGCCAGAAGAAGCAACTTACAAACCCAGCCCGACCCATTCCACAGAGGGCTTTCACAGGCCAGAAAAACAATGTTCTTGGGCAGAATAACCAAAAGCAGAATAACATAACCCATAAAGGCAAATTGACTTCAAAAAGGGAGTCCAACAAGCCGACAACACAAACTTGCTCTTCAGAAAGCTCTACTTCATCACGGAAGTCAGCGAATAAGGGTGCTGTAAATGGCAATACTGAGCCCAATAGGTCAAATACAAGGGTAATTGATTCTCGAAAGGAGTCTACAGTGTCAAAAAGGCGGAGTATTTCTGAAAAGAAGAAGTATATTAGTGCGGTTGTTCACAATGACACAAGAGGTACTGAAAATGTAGTTGATAATTATGAGAACAAGTTCATAAAATGCAATATTACAACTGATAGAAGTACCGACCAGAATGCAGTTAGCATGGGTGAAAGCAAGGATGTGATTTCGTTTACATTTACATCTCCCTTGGGGAGAACCATGCCTGAGTCACAGCCCTCGACCGCAGGAACAAGCAACAGAGTTCATGCCAATACTCATGCTTGTTATCCCAAGAAGTTATCATCATCTACACTCGTGTTGGACACTGACACAATAGATGGTGATACTTTAAGTGTCCTTTTGGAGAAAATGCTTCAAGAATTGCCATCTAGAATTAACTCACCACAATGTACTCTGATCTCAGATGAGTCTTCTTCTGGAAGCTGTAATATGCAGGACAATGGTTGTGCTTCAAGTGAAAATCGAGTGCTTACCATGAATCAGCAGTTGCAGACAGCAGATCCAATGGAAGATCCTAGCTGTTGCAGCAGTGAAAGTGGGAACGATATAGGTTCTCAGCATTCAAGAGCTGTTAAGCTTTTTGAAAATCCTGCTGCCGTCGAAAGTTACTTGGATTGTGAATATAGTATATTTGGAAGCACGCTTTATCCTTCCATACAAGATGAAGAAGTATCTAACTTTTCTTCAATAAATGACTCTGCATCAATTCAAAATGGGGTAGCATGGTCCGAGCAAAGCTCGGAGGTTACAGAAGGAAGTGCGTCCATCAAACAATTCAGTGGAATATCAAATGGGATAGATTTTAGGAGATCAACAAGGGCCATGGAACTCGGATACATAAAGGACTTGCTTAGTGCAGAGCTTCTGGCAGAAGAATTTGTAATTGGTGAAACAAACAAGGTCATAATGCCAAACCTGTTTGATATATTGGAGATTCAGAATGCTGAGAGCTACATAGAGTACTCTAAGCTTGAGAGAAAGGTTTTATTCGACACCGTGAGCGACTGCTTAGAACTAAGATACAGAAAAGCTTTTGTTGGAAGCTGCAAAGCATGGCCTGAATTGGTGGCATCACTGGAGAAAAGGAACTTGTTGGCAGAAGAATTATTAAAAGAGATAATGAGTTTTAGAAGCATGGAAGAGGTAGTAATGGTTGATGAAGTTGTGCATAAGGACATGAGCATTGGATTGGGTAGATGGATTGACTTTGACATTGAAGCCTTTGAAGAGGGTTCGGATGTTGAGTTTGACATACTGACCAATTTGATTAATGAATTGGTTTATGACTTGATGATTGTTTAA 2352 0.4111 MGLDSLPASTVSELSSTSLYGSNSLGSSHCQDGSLHCMADSCPVDCINMPLKLEKSSSGAMKSKAQKVGNLPALRRFQNETLPPKSAKPIPVTHNKLLSPIKNPGYVQPRNVAQIMDAATKIIEASPLQYARNGMSSVGPSSVPLRILDLKEQLEGAHYESKLVNRHIANPVNGKPNEKSSLYKGTLTFKRLGDSEKNSSSYLGIKGKSASVAIPSKADVQSRDTSTLKGKKRHINLKEDNKTKPNQPSRSQKKQLTNPARPIPQRAFTGQKNNVLGQNNQKQNNITHKGKLTSKRESNKPTTQTCSSESSTSSRKSANKGAVNGNTEPNRSNTRVIDSRKESTVSKRRSISEKKKYISAVVHNDTRGTENVVDNYENKFIKCNITTDRSTDQNAVSMGESKDVISFTFTSPLGRTMPESQPSTAGTSNRVHANTHACYPKKLSSSTLVLDTDTIDGDTLSVLLEKMLQELPSRINSPQCTLISDESSSGSCNMQDNGCASSENRVLTMNQQLQTADPMEDPSCCSSESGNDIGSQHSRAVKLFENPAAVESYLDCEYSIFGSTLYPSIQDEEVSNFSSINDSASIQNGVAWSEQSSEVTEGSASIKQFSGISNGIDFRRSTRAMELGYIKDLLSAELLAEEFVIGETNKVIMPNLFDILEIQNAESYIEYSKLERKVLFDTVSDCLELRYRKAFVGSCKAWPELVASLEKRNLLAEELLKEIMSFRSMEEVVMVDEVVHKDMSIGLGRWIDFDIEAFEEGSDVEFDILTNLINELVYDLMIV 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30844g00003 783 Pfam Domain of unknown function (DUF4378) 627 775 IPR025486 -
Stsc30844g00003 783 MobiDBLite consensus disorder prediction 297 333 - -
Stsc30844g00003 783 MobiDBLite consensus disorder prediction 211 350 - -
Stsc30844g00003 783 MobiDBLite consensus disorder prediction 224 247 - -
Stsc30844g00003 783 MobiDBLite consensus disorder prediction 248 288 - -
Stsc30844g00003 783 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 1 779 - -
Stsc30844g00003 783 MobiDBLite consensus disorder prediction 334 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30844g00003 Stsc-Chr30844 19019 22939 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30844g00003 74 781 TRM (TON1 Recruiting Motif) Superfamily AT3G58650 32.333 5.65e-70 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30844g00003 - - gmx:100797988 801.201