LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30838g00002	ATGTTTTCCTTCGTATTTTGCTTGATTCTTTCAAGTTGTCGAATTTCGATAGTTTGGGTGTTGAAGATGGATTCGGATGGTGAGAATGGGAGGAGGAAATCATCATTTGGTAAAGTGGAGTTCGAAGCGGTAGGAGCTCTGAATTCAAAGATGAAGGGTACTGGAAACCAGAGCAGCAAAGACATGATCTTCAGAGCTGATAAAATTGATCTAAAGAGTTTGGATGCTCAGCTGGAAAAGCACCTGACCAAGGTTTGGACGAGAACGATGAGCCTCGAGGTTAAAAGGCCAAAGGAGGAGTGGGAGATTGATTTGGCCAAATTGGATTTAAGGTATGCAGTTGCTCATGGAGCTTATGGAATTGTTTACAGGGGCACATATGATACTCAAGATGTTGCAGTGAAAGTGTTGGACTGGGGTGAGGATGGTGTGGCTACTGCTGCTGAAACTGCGGCTTTACGAGCATCTTTTAAGCAGGAAGTTGCTGTCTGGCAGAAACTTGACCATCCAAATGTTACCAAATTTGTTGGGGCTTCAATGGGTACATCAAATCTTAAGATTCCCCCAAAAATCCCTTCAAGTTTGGATGACAATCCTCCTCCTTCAAGGGCATGTTGTGTCGTTGTTGAGTTTCTCCCGGGCGGAACCCTAAAGCAATACTTGATAAAGAACAGGCGGAGGAAACTTGCTTATAAGATTGTGGTACAGCTGGCTTTAGACCTTGCCAGGGGTCTTAGCTATCTACACTCGAAAAGGATTGTTCATCGGGATGTTAAAACAGAGAACATGTTACTAGATACTAGCCGGAAACTGAAAATAGCTGATTTTGGAGTAGCTCGTGTTGAAGCTTTGAATCCAAGTGACATGACTGGTGAAACTGGAACACTTGGATATATGGCACCTGAGGTCCTAGATGGTAAGCCTTACAACAGGAGATGTGATGTGTATAGCTTTGGTATCTGCTTGTGGGAAATTTATTGCTGCGACATGCCTTATCCAAATCTAAGCTTTGCTGATGTATCTTCTGCGGTTGTTCGTCAGAATTTACGACCAGATATTCCGAGATGCTGTCCAAGTGCCATGGCAAATATCATGAAAAGATGCTGGGATGCAAATCCAAACAAACGTCCGGAAATGAAGGACGTGGTGACGATGCTAGAAGCACTGGACACAAGCAAAGGTGGGGGAATGATACCTGAAGATGAGAGTCCAAGTTGCTTCTGCTTTGTCCCAGCTAGAGGTCCCTAA	1248	0.4415	MFSFVFCLILSSCRISIVWVLKMDSDGENGRRKSSFGKVEFEAVGALNSKMKGTGNQSSKDMIFRADKIDLKSLDAQLEKHLTKVWTRTMSLEVKRPKEEWEIDLAKLDLRYAVAHGAYGIVYRGTYDTQDVAVKVLDWGEDGVATAAETAALRASFKQEVAVWQKLDHPNVTKFVGASMGTSNLKIPPKIPSSLDDNPPPSRACCVVVEFLPGGTLKQYLIKNRRRKLAYKIVVQLALDLARGLSYLHSKRIVHRDVKTENMLLDTSRKLKIADFGVARVEALNPSDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPNLSFADVSSAVVRQNLRPDIPRCCPSAMANIMKRCWDANPNKRPEMKDVVTMLEALDTSKGGGMIPEDESPSCFCFVPARGP	415

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30838g00002	415	Gene3D	Transferase(Phosphotransferase) domain 1	214	397	-	-
	Stsc30838g00002	415	FunFam	Kinase suppressor of Ras 1	97	191	-	-
	Stsc30838g00002	415	FunFam	Serine/threonine-protein kinase HT1	212	397	-	-
	Stsc30838g00002	415	SUPERFAMILY	Protein kinase-like (PK-like)	88	386	IPR011009	-
	Stsc30838g00002	415	Pfam	Protein tyrosine and serine/threonine kinase	111	386	IPR001245	GO:0004672\|GO:0006468
	Stsc30838g00002	415	SMART	serkin_6	108	389	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30838g00002	415	ProSiteProfiles	Protein kinase domain profile.	108	389	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30838g00002	415	Gene3D	Phosphorylase Kinase; domain 1	97	188	-	-
	Stsc30838g00002	415	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	253	265	IPR008271	GO:0004672\|GO:0006468
	Stsc30838g00002	415	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	76	389	-	-
	Stsc30838g00002	415	PRINTS	Tyrosine kinase catalytic domain signature	247	265	IPR001245	GO:0004672\|GO:0006468
	Stsc30838g00002	415	PRINTS	Tyrosine kinase catalytic domain signature	357	379	IPR001245	GO:0004672\|GO:0006468
	Stsc30838g00002	415	PRINTS	Tyrosine kinase catalytic domain signature	313	335	IPR001245	GO:0004672\|GO:0006468
	Stsc30838g00002	415	PRINTS	Tyrosine kinase catalytic domain signature	209	222	IPR001245	GO:0004672\|GO:0006468
	Stsc30838g00002	415	CDD	STKc_MAP3K-like	114	386	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30838g00002	Stsc-Chr30838	5322	8480	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30838g00002	55	415	MAP Kinase Kinase Kinase	AT3G22750	79.778	0.0	618

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Stsc30838g00002		PK_Tyr_Ser-Thr	4.9e-59	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30838g00002	-		-	gmx:100803917	675.626