LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30838g00001	ATGGATTCGGATGGTGAGAATGGGAGGAGGAAATCATCATTTGGTAAAGTGGAGTTCGAAGCGGTAGGAGCTCTGAATTCAAAGATGAAGGGTACTGGAAACCAGAGCAGCAAAGACATGATCTTCAGAGCTGATAAAATTGATCTAAAGAGTTTGGATGCTCAGCTGGAAAAGCACCTGACCAAGGTTTGGACGAGAACGATGAGCCTCGAGGTTAAAAGGCCAAAGGAGGAGTGGGAGATTGATTTGGCCAAATTGGATTTAAGGTATGCAGTTGCTCATGGAGCTTATGGAATTGTTTACAGGGGCACATATGATACTCAAGATGTTGCAGTGAAAGTGTTGGACTGGGGTGAGGATGGTGTGGCTACTGCTGCTGAAACTGCGGCTTTACGAGCATCTTTTAAGCAGGAAGTTGCTGTCTGGCAGAAACTTGACCATCCAAATGTTACCAAATTTGTTGGGGCTTCAATGGGTACATCAAATCTTAAGATTCCCCCAAAAATCCCTTCAAGTTTGGATGACAATCCTCCTCCTTCAAGGGCATGTTGTGTCGTTGTTGAGTTTCTCCCGGGCGGAACCCTAAAGCAATACTTGATAAAGAACAGGCGGAGGAAACTTGCTTATAAGATTGTGGTACAGCTGGCTTTAGACCTTGCCAGGGGTCTTAGCTATCTACACTCGAAAAGGATTGTTCATCGGGATGTTAAAACAGAGAACATGTTACTAGATACTAGCCGGAAACTGAAAATAGCTGATTTTGGAGTAGCTCGTGTTGAAGCTTTGAATCCAAGTGACATGACTGGTGAAACTGGAACACTTGGATATATGGCACCTGAGGTCCTAGATGGTAAGCCTTACAACAGGAGATGTGATGTGTATAGCTTTGGTATCTGCTTGTGGGAAATTTATTGCTGCGACATGCCTTATCCAAATCTAAGCTTTGCTGATGTATCTTCTGCGGTTGTTCGTCAGAATTTACGACCAGATATTCCGAGATGCTGTCCAAGTGCCATGGCAAATATCATGAAAAGATGCTGGGATGCAAATCCAAACAAACGTCCGGAAATGAAGGACGTGGTGACGATGCTAGAAGCACTGGACACAAGCAAAGGTGGGGGAATGATACCTGAAGATGAGAGTCCAAGTTGCTTCTGCTTTGTCCCAGCTAGAGGTCCCTAA	1182	0.4467	MDSDGENGRRKSSFGKVEFEAVGALNSKMKGTGNQSSKDMIFRADKIDLKSLDAQLEKHLTKVWTRTMSLEVKRPKEEWEIDLAKLDLRYAVAHGAYGIVYRGTYDTQDVAVKVLDWGEDGVATAAETAALRASFKQEVAVWQKLDHPNVTKFVGASMGTSNLKIPPKIPSSLDDNPPPSRACCVVVEFLPGGTLKQYLIKNRRRKLAYKIVVQLALDLARGLSYLHSKRIVHRDVKTENMLLDTSRKLKIADFGVARVEALNPSDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPNLSFADVSSAVVRQNLRPDIPRCCPSAMANIMKRCWDANPNKRPEMKDVVTMLEALDTSKGGGMIPEDESPSCFCFVPARGP	393

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30838g00001	393	FunFam	Kinase suppressor of Ras 1	75	169	-	-
	Stsc30838g00001	393	SUPERFAMILY	Protein kinase-like (PK-like)	66	364	IPR011009	-
	Stsc30838g00001	393	PRINTS	Tyrosine kinase catalytic domain signature	187	200	IPR001245	GO:0004672\|GO:0006468
	Stsc30838g00001	393	PRINTS	Tyrosine kinase catalytic domain signature	291	313	IPR001245	GO:0004672\|GO:0006468
	Stsc30838g00001	393	PRINTS	Tyrosine kinase catalytic domain signature	225	243	IPR001245	GO:0004672\|GO:0006468
	Stsc30838g00001	393	PRINTS	Tyrosine kinase catalytic domain signature	335	357	IPR001245	GO:0004672\|GO:0006468
	Stsc30838g00001	393	Pfam	Protein tyrosine and serine/threonine kinase	89	364	IPR001245	GO:0004672\|GO:0006468
	Stsc30838g00001	393	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	231	243	IPR008271	GO:0004672\|GO:0006468
	Stsc30838g00001	393	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	61	367	-	-
	Stsc30838g00001	393	Gene3D	Transferase(Phosphotransferase) domain 1	192	375	-	-
	Stsc30838g00001	393	Gene3D	Phosphorylase Kinase; domain 1	75	166	-	-
	Stsc30838g00001	393	SMART	serkin_6	86	367	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30838g00001	393	ProSiteProfiles	Protein kinase domain profile.	86	367	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc30838g00001	393	FunFam	Serine/threonine-protein kinase HT1	190	375	-	-
	Stsc30838g00001	393	CDD	STKc_MAP3K-like	92	364	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30838g00001	Stsc-Chr30838	4841	8328	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30838g00001	33	393	MAP Kinase Kinase Kinase	AT3G22750	79.778	0.0	618

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Stsc30838g00001		PK_Tyr_Ser-Thr	4.1e-59	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30838g00001	-		-	gmx:100803917	675.626