Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30827g00008 ATGGCTTTGAGTTTTGAATCATACAAATGGAAGTATGATGTGTTCTTGAGCTTCAGAGGGGTTGACACACGTAGGACTTTCACAAGCCATCTCTACCATGCTCTATTCCAAAAGGGAGTTAATAGCTTCATAGACTACAAGGAGCTTGAAAAGGGAGAGCAGATTTCGCCTTCAATTCTTAGAGCTATTGAAGGCTCTAGGATATCAGTTATTATATTCTCGGAAAACTATGCATCTTCTGTTTCTTGCTTGGATGAACTCGTTAAGATCCTCGAGTGCAAGGATTCCAAAGGGCAGCTAGTTTTGCCAGTCTTTTATAACGTGAATCCATTTCAACTAAGAGGACAACATGGAACTTTTGCAGAATATTTAGCAAAACATGAAGAGAAGTTCAGGGATGATGATATCAACAAAGTGAAAAGGTGGAGAGAAGCTCTATATCAAGCTTCTACTTTGTATGGGTGGCATCTAGGAGATGGGCAGGAATCTAAGTTTGTGCAGAGAATTGTTGAAGAGATAATGAATAAGCTGAATCTCATACCTTTCAATGTTGCTAAGCATCCTGTTGGGTTGGATTCACCAGCTGAAGATGTCAAATCACTCTTAGATCTTGGATCAGATGGCGTGCGGGCTGTAGGAATTTATGGCATTGGTGGAATAGGAAAAACAACACTTGTTAAGGCTGTTTACCATCATATTTCTCATCAGTTTGAGGGTAGTGCCTTCCTTGCAAATGTCAGAGAAATTTCAACCCAAAGCCATGGCTTAGTTCAACTACAAGAAGCACTTCTCTCGGAGATTTTGAGCCGTAGAGATTTAAAAGTAGGCAACAAAGATAGAGGGATTAATCTGATAAAGAACAGGCTTTATTGCAAAAAGGTTCTCATAGTTGTTGATGATTCTGATTCATTGGAGCAACTTGAATCATTG 930 0.3957 MALSFESYKWKYDVFLSFRGVDTRRTFTSHLYHALFQKGVNSFIDYKELEKGEQISPSILRAIEGSRISVIIFSENYASSVSCLDELVKILECKDSKGQLVLPVFYNVNPFQLRGQHGTFAEYLAKHEEKFRDDDINKVKRWREALYQASTLYGWHLGDGQESKFVQRIVEEIMNKLNLIPFNVAKHPVGLDSPAEDVKSLLDLGSDGVRAVGIYGIGGIGKTTLVKAVYHHISHQFEGSAFLANVREISTQSHGLVQLQEALLSEILSRRDLKVGNKDRGINLIKNRLYCKKVLIVVDDSDSLEQLESL 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30827g00008 310 Gene3D - 175 310 IPR027417 -
Stsc30827g00008 310 Pfam NB-ARC domain 198 300 IPR002182 GO:0043531
Stsc30827g00008 310 Gene3D - 8 174 IPR035897 -
Stsc30827g00008 310 ProSiteProfiles TIR domain profile. 10 177 IPR000157 GO:0007165
Stsc30827g00008 310 PRINTS Disease resistance protein signature 288 302 - -
Stsc30827g00008 310 PRINTS Disease resistance protein signature 211 226 - -
Stsc30827g00008 310 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 309 IPR044974 GO:0006952
Stsc30827g00008 310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 310 IPR027417 -
Stsc30827g00008 310 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 155 IPR035897 -
Stsc30827g00008 310 SMART till_3 11 152 IPR000157 GO:0007165
Stsc30827g00008 310 Pfam TIR domain 11 180 IPR000157 GO:0007165
Stsc30827g00008 310 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30827g00008 Stsc-Chr30827 32081 33449 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30827g00008 5 310 WRKY Transcription Factor Family AT4G12020 26.752 2.16e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30827g00008 - - ahf:112749316 548.895