Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30827g00007 ATGGCACACCAAGGATGGTTTTACCATGTTTTCTTGAGCTTTCGAGGCGAAGACACCCGCAAAACTTTTGCCGGCAACCTCTACAGTGCTCTTGATCAAAGGGGAATCAACACTTTCATAGATAATGAGGGTCTAAGGGTTGGAGAAGAGATATCACCATCCCTTCTCAAGGCAATAGAAGAGTCCAGGATCTCCATCATCATATTCTCCAAGAACTATGCTTCCTCCAGATGGTGCCTTGACGAACTTGTGAAGATCCTTGAGTGTAGGAAGGAAAAGGGACAGGTGGTTTGTGCAGTTTTCTACAATGTGAGTCCAGCAGATGTGAGGCACCAGAAAGGAAGCTATGGAGAAGCTTTTGTTAAGCATGAGGAAAGATTCAAACACGACACGGAGAGGGTGCGAAAATGGAGGTCTGCTTTGTGTGAAGCAGCAAATTTGTCTGGCTGGCATTTCACTAACGGGTATGAATATAAATTTATCCAAACAATAGTGGATGAAGTAATCCAAAAGTTGAATCGCATTCCGCTAAATGTAGCTAGACACCCTGTTGGACTCGAAGCTCGTGTATCAGAAGTATATTCACTGTTAGGACTTGGATCTGATGATGTTAGAATGGTTGGAATTTATGGGATTGGTGGGATTGGTAAAACAACCATTGCCAAAGCTGTTTATAACACACTATGTGATCAGTTTCGATATGCGAGTTTTCTTGCCAATGTCAGAGAAAATACAAGCCATAGGTCTGGCTTAGTCAAACTACAAAATAGGCTTCTTTATGAGATACTTGGAGAGAAAGCAACAAAGTTGGGAAATGTTGACATAGGAATCAATATCATAAAAGACAGGTTGTGCAGAAGAAGAGTTCTTCTTGTAATCGATAATGTGGATGATGTCGATCAGCTACAAGCATTGGCCGGAGGATTGGATTGGTTTGGCCCTGGAAGTAGGATTATCATAACTACAAGAGATAAGCATTTGTTAACTTCTCATCAAGTTGATTTGACTTATGAGGTGAAGAAATTAAACCACCATGAAGCTCTTCAACTATTCAGTTGGAATGCCTTTAAAAGAAGTGAACCTGATGCAAGTTATTTCGACATTGCAAATCGTGCAGTAGCTTATGCAGAGGGTCTTCCACTAGCATTATCAGTATTAGGCTCTGATATGTGTGGCAGAAGCATTTGCCAATGGGAATCTGCGTTGGATAAATACAGGAGAAGTCCTAATAGGAAAGTTCAGGACATACTTAGAATAAGCTTTGATGGGTTGGAGGAAAATGAAAAGGAAATTTTCCTCTATATAGCATGTTTCTTCAAAGGACAGATAATGGAATATGTTGTAAAAGCATTACGCGCTTGTGATCTGCACCCAGCAATTGGTATTGCAGTACTTGTTGATAAGTCACTCATAACGTTGGATGAAAGATTTGTATTGTCTATGCATGATCTTGTCCAAGACATGGGTAAGGAAATTGTTAGGCAAGAATCACCACAAGATCCTGCAAATCGCAGCCGGTTATGGTACTATGAGGATGTGCTTCAAGTTTTGACTGAAGGGATGGGAAGTGACAAGATTCAAGGTATAATGCTAGACCTGCCAGAAAAGCAAGAGGTGCAGCTAAGTGATCAAGACTTTAGGAAGATGAAAAACCTTAGAATGCTAATAATTCGTAATGCTGAAATTTCTGGAGGCCATGTACATCTACCAAGAAATCTGAGGCTGCTTGACTGGGAGGACTACCCTTCACCATCTTTACCATCTGATTTTCTTCCTGAGAAAATCGAAATGCTGGAACTGCAGCATAGTCATCTATATACACTGGACAAGTCATTCAAGAAGTATGCAAATCTGACTTCTCTTAATTTCAGCTCCTGTGAGTCCCTTACAAGAATACCTGATGTTTCTGGGATCCCGAATTTAGAGCAACTGATTCTCGAAGACTGTACAGGTTTGGTTGATATTCATGAATCTGTTGGATCACTTGATAAACTTGTTTATTTAGGTGTCGAAAGGTGCACTGAGCTGAAGAACTTACCAAGTGTCCTAAAGTTGCCCTCATTAGCATGCATTGCTCTTAATGGTTGTTCTCAACTTGAGCAGTTTCCAGAATTGTTGGGAGACATGGAAAATTTGAGAATTGTTGAGATGGAAGAGACTGCAATACAAGAACTGCCTTCTTGTATATCCAATTTCAGTAGCCTTGAGGTTTTAGTGCTGAAATGCTGCTCGAATCTTAAGGAACTTCCTATAACCATTGATATGTTACCAAATCTTCAGATACTTGATATTTCTGGCTGTCCACAACTTCAATTATTTACAAAGAATCTTAGGAGTTTCAGCACACAGAATTACTCAACTATGCCGGCAGAATTGGATGAGGATTCACCAAATCTCGAGCTACTACCGTCACCACCATGTCTGGATCCGATCTCTCCTAACATCCATTCATCATATGGCTTCCCTTTGTTGGAAAACCTTGAACTCAGTGACTGCAATCTATCAGATGAAGACCTACATATCCTTAGTTGCTTTTCCAATCTTGCATCCTTAGACATTTCTAGAAACAATTTTGTAACCCTTCCCAAATGCTTCAATAGACTTTGTAGCTTGCAGGAGCTATACGTGGCTAATTGCAGGAAACTTCAACATATTTCTGGGATTCCTCCCAATTTAGAACACATAGATGCTACTAGTTGCACCCGTTTGGAATCACAATCATTGGACTTCTTATTAAGCCAGGGATTCTCTAAGGCATTCAAATTTGAGGTTATAGCACCAAGGCCAAAGATGCAAATGTCATTCAATTACCAGAGTGAAGGAGGGTCTATGTCATTTTGGATTGGCCAGAAATTCCCAAGAATTGCTTTGTGTTTCATTTTTGGACTAGGAAATAAAATTACTGGCTTTTTCACCTGTGAAGTCCAGCTATCTATTAATGGACAGAAAGCATCCAAAAGAGTAGAGAACTTCCTTTCGGTGATCGGTGATCTCGCATGGCTATATCATCAAGATGTAATGGATTTCAATACTTATTTACTGCATGAACAAAATTATGTTGAAGTTACTTGTGAAATCATAGATGCAAGCAAAGATGCAGAAGTGACCGTGTTCTATTGTGGAGTTCATGAGTATAAGGATGGTGAGGATGTTAAGACACAAAATTTGAGGCTTCATGAAATACCAGATGAACAATGGAAACAACATCCAGCTTCAATAAATGCCGAAACACTTGAAGGTGATGTATGCATGGAAAAGGAAAATAGAAAAATTACTGCTATTATGTCATCTGATGAAGTGCATCAAAGCAAAGAGCTGCCATTGTTGCAACTGAAGCAATATGATGATGTGGTTTGGGATCCAATGCTATTAGAATGTCAGTTGAACAGTATGAATGATAATCCACTCATCGCATATGACTACCACCCATCAAAAAGTAAAGAAGTTGGAGCTATGCATGGGGCTCTAGTTCCTCCCAAAGAAACTGGAGAAAAAACCTTTCATAATGTTACTAAGGAGGATTTGGTATCTCAGAAGAAGGTAGGATTAAAAACGAATAATGTCCTGAAGGAACCAAAGGAAGAACCTGAGGTGCACATTGTTACCACAGATATGGAACCAGAGCTGCATTATGAAACCACGAGCAATAAGCTTGATGCGTTTCCAATTGCACAAAATACAAGTCAATTTGACTTAAGTGACAATATGGAAGAATTTTATGCTACCCTCAATGCTGAGACCTTTGCTCTATCATCTTTAACTTCAAGAGATAGCAGAGATGATTCAAAATTATCTTATCCTGAAATTAGTGAAGAAACCGGGAAAGCATTGGAAATGCTCAAGGAATTCCTCTCCGAACAATTTCATCAACTTTTGTCCTCGGGATCATTTTCCTCCATGAAAGCTGCCTTAGAATGTCTCTCCACTTTGTCTGCAGATGATGATGTCTCTTTGTGTTTAAAATCTCTATTACAACAACTTTCAGCAGATTTTGACCAGTGGAGTTGTGACTACATTGACGCAAGTACGAAACTTGAGTCATCAACTGCAGGCCTTTCAATGTTAGATACACTGGAAGATAGTTTGATGGCTAACAAGAACCAGTTCAGTGAATTTTCATCCATAGAAGTTGATGTTTGCAGCCAGTTGGTTTATTTGGAACAAAGAAAGAAAGAGCTTGAAGAGCTATTGGAAGCTATTAAATATAGTATCTCCATCTCTCAAGTGGCTAGGGACACTGCCCTTAGTAAGAAAAGAGAAACTTTTGAGGAAGGAAGAATGTTGAAAGATCAAAGAGATCAATTGAGGAAGCAAAGGCCACGTTTGAGATCAGAGCAAGAATCAGCAAAGGCTACCAAAGCAAACATTGAGGATGAGTGGTCAAAGATTAGAGAGAAATTTGAGGGAATCTTGAACAATTTTGGGTCAAAATATTATAACTAG 4443 0.3948 MAHQGWFYHVFLSFRGEDTRKTFAGNLYSALDQRGINTFIDNEGLRVGEEISPSLLKAIEESRISIIIFSKNYASSRWCLDELVKILECRKEKGQVVCAVFYNVSPADVRHQKGSYGEAFVKHEERFKHDTERVRKWRSALCEAANLSGWHFTNGYEYKFIQTIVDEVIQKLNRIPLNVARHPVGLEARVSEVYSLLGLGSDDVRMVGIYGIGGIGKTTIAKAVYNTLCDQFRYASFLANVRENTSHRSGLVKLQNRLLYEILGEKATKLGNVDIGINIIKDRLCRRRVLLVIDNVDDVDQLQALAGGLDWFGPGSRIIITTRDKHLLTSHQVDLTYEVKKLNHHEALQLFSWNAFKRSEPDASYFDIANRAVAYAEGLPLALSVLGSDMCGRSICQWESALDKYRRSPNRKVQDILRISFDGLEENEKEIFLYIACFFKGQIMEYVVKALRACDLHPAIGIAVLVDKSLITLDERFVLSMHDLVQDMGKEIVRQESPQDPANRSRLWYYEDVLQVLTEGMGSDKIQGIMLDLPEKQEVQLSDQDFRKMKNLRMLIIRNAEISGGHVHLPRNLRLLDWEDYPSPSLPSDFLPEKIEMLELQHSHLYTLDKSFKKYANLTSLNFSSCESLTRIPDVSGIPNLEQLILEDCTGLVDIHESVGSLDKLVYLGVERCTELKNLPSVLKLPSLACIALNGCSQLEQFPELLGDMENLRIVEMEETAIQELPSCISNFSSLEVLVLKCCSNLKELPITIDMLPNLQILDISGCPQLQLFTKNLRSFSTQNYSTMPAELDEDSPNLELLPSPPCLDPISPNIHSSYGFPLLENLELSDCNLSDEDLHILSCFSNLASLDISRNNFVTLPKCFNRLCSLQELYVANCRKLQHISGIPPNLEHIDATSCTRLESQSLDFLLSQGFSKAFKFEVIAPRPKMQMSFNYQSEGGSMSFWIGQKFPRIALCFIFGLGNKITGFFTCEVQLSINGQKASKRVENFLSVIGDLAWLYHQDVMDFNTYLLHEQNYVEVTCEIIDASKDAEVTVFYCGVHEYKDGEDVKTQNLRLHEIPDEQWKQHPASINAETLEGDVCMEKENRKITAIMSSDEVHQSKELPLLQLKQYDDVVWDPMLLECQLNSMNDNPLIAYDYHPSKSKEVGAMHGALVPPKETGEKTFHNVTKEDLVSQKKVGLKTNNVLKEPKEEPEVHIVTTDMEPELHYETTSNKLDAFPIAQNTSQFDLSDNMEEFYATLNAETFALSSLTSRDSRDDSKLSYPEISEETGKALEMLKEFLSEQFHQLLSSGSFSSMKAALECLSTLSADDDVSLCLKSLLQQLSADFDQWSCDYIDASTKLESSTAGLSMLDTLEDSLMANKNQFSEFSSIEVDVCSQLVYLEQRKKELEELLEAIKYSISISQVARDTALSKKRETFEEGRMLKDQRDQLRKQRPRLRSEQESAKATKANIEDEWSKIREKFEGILNNFGSKYYN 1480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30827g00007 1480 ProSiteProfiles TIR domain profile. 6 172 IPR000157 GO:0007165
Stsc30827g00007 1480 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 704 IPR044974 GO:0006952
Stsc30827g00007 1480 SUPERFAMILY "Winged helix" DNA-binding domain 412 517 IPR036390 -
Stsc30827g00007 1480 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 174 - -
Stsc30827g00007 1480 Gene3D Ribonuclease Inhibitor 529 804 IPR032675 -
Stsc30827g00007 1480 Pfam TIR domain 8 176 IPR000157 GO:0007165
Stsc30827g00007 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 435 IPR027417 -
Stsc30827g00007 1480 Gene3D - 174 337 IPR027417 -
Stsc30827g00007 1480 MobiDBLite consensus disorder prediction 1422 1450 - -
Stsc30827g00007 1480 Gene3D - 5 173 IPR035897 -
Stsc30827g00007 1480 SMART till_3 7 147 IPR000157 GO:0007165
Stsc30827g00007 1480 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 150 IPR035897 -
Stsc30827g00007 1480 Pfam NB-ARC domain 201 409 IPR002182 GO:0043531
Stsc30827g00007 1480 Gene3D Ribonuclease Inhibitor 811 917 IPR032675 -
Stsc30827g00007 1480 Gene3D - 341 425 IPR042197 -
Stsc30827g00007 1480 PRINTS Disease resistance protein signature 283 297 - -
Stsc30827g00007 1480 PRINTS Disease resistance protein signature 754 770 - -
Stsc30827g00007 1480 PRINTS Disease resistance protein signature 206 221 - -
Stsc30827g00007 1480 PRINTS Disease resistance protein signature 376 390 - -
Stsc30827g00007 1480 SUPERFAMILY L domain-like 495 908 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30827g00007 Stsc-Chr30827 26106 31457 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30827g00007 8 804 WRKY Transcription Factor Family AT4G12020 31.334 6.01e-98 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30827g00007 - - lja:Lj0g3v0340619.1 1994.55