Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30827g00003 ATGCTGTATGAAGGGAATTCATCCTATGGCCATGGATGGTCCTATGATGTATTCTTGAGTTTCAGGGGTGAAGACACAAGGAGAAGCTTCACAGGCTCACTTTACCACAGTTTGCGCCAAAAGGGTATCAATGTTTTCATAGATGATGATAAGCTTAGGAGAGGGGAAGAGATTTCCCCAGCTCTTCTTAGAGCTATTGAAGAGTCAAGGATTTCCATCATTGTGTTCTCTCAAAACTATGCATCTTCCAAATGGTGTCTTGATGAGCTTGTTAAGATCATTGAGTGCATGAAAACAAGGGGGCAATTGGTTTTTCCGGTGTTCTTCAATGTCAATGCTTCCATGGTGCGGTATCAGAAAGATAGTTTCGGCAGAGCAATGTCTATTCATGAAGTAAGATACAAGGGTAATGAGGAGAAGTTGCAGAAATGGAAGCAGGCCTTGTTTGAAGCAGCTAATTTATCTGGTTGGAGCTTTAAAAATGGGTATGAGTATGAGCTTATCGAAATGATTGCCGAGGAGGTCTCAAAGAAGATCAATCAAACTCCTTTGCACATATCTGAATACCCTGTTGGCCTAGAGACTCGCATATCGGAAGTGAAATCTCTGCTGCATATTGGACCTGGTGAAGATATTCGTGTGGTCGGAATCTATGGACTTGGAGGTATAGGTAAAACAACGATTGCGAGGGCTTTATACAACTTGATTGCAGATCAGTTTGAAGCTACAAGTTTCCTTGCTGACATAAGAGAAAGTTCGAATCAACGTCAAGGTTTAGTACAACTTCAAGAATCACTTCTGTTTGATATAGTTGGGGACAAGAACATTAAGTTGCAAAATATTTATAAAGGGATTCCCATTATAAAGAAAAGATTATGCTGCAAAAAGGTTCTTTTGATTCTTGATGATGTCGACAAATTGGAGCAGCTACAAGCATTAGCAGGAGGACGCGATTGGTTCGGTTTTGGCAGTGTAATAATTATTACAACAAGAGATAAGCATTTGCTAGCTGCTCATCAGGTTGATAAAACATATGAAGTAAAGAAACTAAACCATGAAGAAGCTTTTGAGCTGTTCACTTGGAATGCTTTCAAAAGAAAAGAACCTGATGCAGGCTATATGGAGATTTCAAACCGTGTTGTGCTCCATGCCGAGGGGCTTCCGTTGGCTCTGAAAGTAATGGGCTCAAATTTGATTGGAAAAACTGTGGATGAGTGGAACTCTGCACTAGAAAAATATGAAAAGATTCCTAATAAAGAGGTTCAAAATGTACTTAGAGTAACCTATGATAATCTTGAGGAGAATGAGAAAGAAATATTCCTGGATATAGCATGTTTCTTCAAAGGGGAGACAATGGAATATGTTGAAAAGACACTGAAAGCATGTAGTTTCCATCCGAAAATCGGCATTAGTGTACTTATCGATAGATCTTTAGTAAGTATTGATGAGTACAACAGGTTGAGAATGCATGATCTGATTCAAGACATGGGGAGGGAGATTGTAAGAGAAGATTCACCTTTAGAGCCCGGCAGGCGAAGTAGAATATGGTATCATGAAGATGTTATTGAAGTACTAACTGAAAGCACGGGGACTTACAAAATTCAAGGCATGATGGTGGACCTTCCAGATCAATACATGATACACTTGAAGAATGATTCCTTCAAGAAAATGAAAAATCTTAAAATCCTCATAGTTCGAAATGGACAATTTTTTGGAAGTCCCCAAGATCTTCCAAACAATTTGAGGTTGCTTGATTGGATGGAGTATCCTTCATCATCTTTCCCATCTAGTTTCCTTCCAAGGAAACTTGCTGTGCTCAACTTGTCGCGCAGCCGTTTCACAATGCAAGAGCCATTCAAGCATTTGGACTCTCTGACATCTTTGGATTTGAGTTACTGTGAAGTTTTAACAGAACTACCTGACTTTTCTGGAGTCCCAAATTTAACAGAACTAAATCTTGATTACTGTACAAATTTAGCAGAGGTTCATGACTCAGTTGGGTTCCTTGTGAAGCTTGTTGAGTTGAGGGCCTATGGATGCACCAAGCTTAAGGTTTTTCCATCTTCGATCAAGATGACATCGCTGCAAAGTCTTATTCTTAATTGGTGCTCAAGTCTCCAAAGTTTCCCATCTATTCTGTGGAAAATGGACAATCTCATGTCCATTTCCATAGAAGGCACTGGTATCAAAGAATTGCCTCCTTCCATTGGAAACCTTGTTGGACTTCAAGAATTTAGCATGACATCATGCTTGAATCTCAAGGAACTTCCAGAAAGCTTTGATATGTTGAAAAACCTTAGGAACCTTGATATCGAAGGGTGTCCCCAACTTCGGAGCTTCTTGACCAAATTGAGAGAATCAGGAACGTCTAGTCCTACCTTTGATAATGTTCAGTCTCTTAATCTAGAGAACTGTGGCCTTAGAGATGAAGATCTTCCCACAATTTTCTATTGTTTCCCAAAACTGTCTTCATTAGTCCTTTCAGGAAATTGTTTTGTCACTCTTCCAAGCTGCATTCAGGAATTTCAAACCTTGGAATTACTTCACTTGGACAGATGCAACCTACTCCAAGAAATTCATTGCATTCCTCCCAATTTACAATACATTAATGCAAGAAATTGCACATCATTGACTGAAAGGTCATCAAACTTATTATTGAGCCAGGAAACTTTTGAGGCATGTGAGTTACAGGTTATGGTGCCTGGAAGAAGAGTTCCAGAATGGTTTGATTACTGTGCCAAAGGAGAATATCTGACGTTTTGGGCACGCCAAAAATTTCCAGTGCTTATTTTTTGCTTTGTTATTGAGGTAGAAGGTGCAATGGAGGATACTTTAAATTGTGAAGTCCAGTTTTCTATAAATGGTGAAGAAATTTTTGAATTGGAAATGCCACGATGCTTCTCAAAAATGGTCACAGATCATGTGTGGATATATGATTTGCGAACGCATCCAACCATCCAGTGGCACAGTCTTGATTCATATCTAGTAGGTGACTGGAATCAGGTTGAGATTTCCTGTGAGAGAATAAGTGGGTCATCAAACATGAGAGTGAGCTGGTGTGGAGTTCATATATGCAAGCAAGAAGTTAACATGGAGAATATACTATTCACATATCCTGATTCGGATGCTACTAGTGAAGAAAGCACAAAATCAGTACAATATTTCAAGAGTTTAGATGATAATTGCTGTGATTTCGATAACAGAGAAACTTGCGTCACAATCAATAGACAACAAGAGGAACTGGGGGAAATAAGTAAAGGAAAAGAAATTAGTGAAACTGCATGCCACAATGATGTTGATCAGAGTGACAAGAAGATTTTAATGCATATGCAACCTTTGGATGGTGTTATTGAACATCCAATTGCTTTTGTCAAAGTGATAGATTATGGATCAAACACAATCTTTGTTGATCATCCAGCAAAAGCTCAACCAGAATCTCAAGTCAAAAGTTTTGTGGGGACACCAAATATAGATGATGTAGAAATGGAAGCATTTTATGCATCTCTAGAAGCTGAGACTTCTGTTCTTCCTCTGTCCAAAAACACCATAGTTGGTTCCGAATTCGCCAACAGAGTGCCAAGTGAAGCGACACAGCAAGTGTTAATGACACTACAAGACTTTCTCACTAGAGACTTTTCTCTTCTTTTAGGCCCTGATGAGTACAATGCCATGAAAGCTACCTTAGAGTACCTCACAGATTTACCTCCAGGAGATGGGATTTCATTGGAATTGAGATCATTGGTTATAGAAGTTTCAAGACAGTTCAACCATTGGAGTTTGGATTACACCAATGAGAGCAAGAAAATAGAGGCTGCCACGGCGAAGTTGTCGAAAGTTGATGAACTAGAAGAGGGTCTTGAAGCTAACAAGGCGAATTTTCGAGAAGCCATGTGGTTAGAAAATGAGTTGAGAAGCGAATTGGAATATTTGGAGGAGAGAAAGAAGGAGCTTGAAGAACAGATACATGCCATTAAAGGTAGCATATCTGCTTCTGAATCAGCAAGGAACATGGTTACTTATAGGAAGAGAGAAATCTTTGGAGAAGCAAAGATATTAAAAAATCAAAGGGATGAATTGAAGGAGCAAGTGCCATGGTTGAAAGATGAGAAGGAATTGGCAAGGAAAATTCAGACAAATATTAGAGCTGAATGGTCAAAGCTTCGAGAAAAATTTAACAGAAAATTAAGGTCTGAAGAACTCTGA 4203 0.3911 MLYEGNSSYGHGWSYDVFLSFRGEDTRRSFTGSLYHSLRQKGINVFIDDDKLRRGEEISPALLRAIEESRISIIVFSQNYASSKWCLDELVKIIECMKTRGQLVFPVFFNVNASMVRYQKDSFGRAMSIHEVRYKGNEEKLQKWKQALFEAANLSGWSFKNGYEYELIEMIAEEVSKKINQTPLHISEYPVGLETRISEVKSLLHIGPGEDIRVVGIYGLGGIGKTTIARALYNLIADQFEATSFLADIRESSNQRQGLVQLQESLLFDIVGDKNIKLQNIYKGIPIIKKRLCCKKVLLILDDVDKLEQLQALAGGRDWFGFGSVIIITTRDKHLLAAHQVDKTYEVKKLNHEEAFELFTWNAFKRKEPDAGYMEISNRVVLHAEGLPLALKVMGSNLIGKTVDEWNSALEKYEKIPNKEVQNVLRVTYDNLEENEKEIFLDIACFFKGETMEYVEKTLKACSFHPKIGISVLIDRSLVSIDEYNRLRMHDLIQDMGREIVREDSPLEPGRRSRIWYHEDVIEVLTESTGTYKIQGMMVDLPDQYMIHLKNDSFKKMKNLKILIVRNGQFFGSPQDLPNNLRLLDWMEYPSSSFPSSFLPRKLAVLNLSRSRFTMQEPFKHLDSLTSLDLSYCEVLTELPDFSGVPNLTELNLDYCTNLAEVHDSVGFLVKLVELRAYGCTKLKVFPSSIKMTSLQSLILNWCSSLQSFPSILWKMDNLMSISIEGTGIKELPPSIGNLVGLQEFSMTSCLNLKELPESFDMLKNLRNLDIEGCPQLRSFLTKLRESGTSSPTFDNVQSLNLENCGLRDEDLPTIFYCFPKLSSLVLSGNCFVTLPSCIQEFQTLELLHLDRCNLLQEIHCIPPNLQYINARNCTSLTERSSNLLLSQETFEACELQVMVPGRRVPEWFDYCAKGEYLTFWARQKFPVLIFCFVIEVEGAMEDTLNCEVQFSINGEEIFELEMPRCFSKMVTDHVWIYDLRTHPTIQWHSLDSYLVGDWNQVEISCERISGSSNMRVSWCGVHICKQEVNMENILFTYPDSDATSEESTKSVQYFKSLDDNCCDFDNRETCVTINRQQEELGEISKGKEISETACHNDVDQSDKKILMHMQPLDGVIEHPIAFVKVIDYGSNTIFVDHPAKAQPESQVKSFVGTPNIDDVEMEAFYASLEAETSVLPLSKNTIVGSEFANRVPSEATQQVLMTLQDFLTRDFSLLLGPDEYNAMKATLEYLTDLPPGDGISLELRSLVIEVSRQFNHWSLDYTNESKKIEAATAKLSKVDELEEGLEANKANFREAMWLENELRSELEYLEERKKELEEQIHAIKGSISASESARNMVTYRKREIFGEAKILKNQRDELKEQVPWLKDEKELARKIQTNIRAEWSKLREKFNRKLRSEEL 1400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30827g00003 1400 SMART till_3 14 154 IPR000157 GO:0007165
Stsc30827g00003 1400 Pfam TIR domain 15 184 IPR000157 GO:0007165
Stsc30827g00003 1400 Pfam NB-ARC domain 195 427 IPR002182 GO:0043531
Stsc30827g00003 1400 Gene3D Ribonuclease Inhibitor 536 690 IPR032675 -
Stsc30827g00003 1400 Coils Coil 1300 1327 - -
Stsc30827g00003 1400 PRINTS Disease resistance protein signature 384 398 - -
Stsc30827g00003 1400 PRINTS Disease resistance protein signature 620 636 - -
Stsc30827g00003 1400 PRINTS Disease resistance protein signature 291 305 - -
Stsc30827g00003 1400 PRINTS Disease resistance protein signature 214 229 - -
Stsc30827g00003 1400 Gene3D - 11 180 IPR035897 -
Stsc30827g00003 1400 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 157 IPR035897 -
Stsc30827g00003 1400 Coils Coil 1269 1289 - -
Stsc30827g00003 1400 Gene3D Ribonuclease Inhibitor 691 891 IPR032675 -
Stsc30827g00003 1400 SUPERFAMILY "Winged helix" DNA-binding domain 420 525 IPR036390 -
Stsc30827g00003 1400 FunFam Disease resistance protein (TIR-NBS-LRR class) 11 181 - -
Stsc30827g00003 1400 Gene3D - 349 433 IPR042197 -
Stsc30827g00003 1400 ProSiteProfiles TIR domain profile. 13 179 IPR000157 GO:0007165
Stsc30827g00003 1400 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 758 IPR044974 GO:0006952
Stsc30827g00003 1400 SUPERFAMILY L domain-like 537 885 - -
Stsc30827g00003 1400 Coils Coil 1342 1369 - -
Stsc30827g00003 1400 SMART AAA_5 211 346 IPR003593 GO:0016887
Stsc30827g00003 1400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 443 IPR027417 -
Stsc30827g00003 1400 Gene3D - 181 347 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30827g00003 Stsc-Chr30827 7561 12420 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30827g00003 15 780 WRKY Transcription Factor Family AT4G12020 31.710 1.80e-91 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30827g00003 - - ccaj:109810288 2117.43