Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30826g00006 ATGTCAAGAAAAGTGGAAGACAAATGGAATCCAATTGCACAGCTCTTGGAGTCAGGTAATCTTGTTGTCAAAGATGGACATAACAGTGACCACTTTCTATGGCAGAGCTTTGATTATCCTCGTGACACACTCGTGCCGGGAATGAAGCTGGGATGGGATCTTGTGACAGGTCTAGAGAGGACTCTAACATCTTCGAAGAGTATTGATGATCCCGGCGGTGGAGACTACACTTTAAGAATTGACCTCCATGGTTATCCGCAAGTATTTCTAATGAATGGAAACACCATAACAATTAGAGTAGGGCCATGGAATGGGCTAATGTTTTCAGGAGCTACACTTTATTTGAGCTATACCCAATTTGTTTCCAATGAAGAAGAGGTGTTTGTTAGGTACAGACCAGAAAATACATCAAAGTTTATTAGAGGTGTAGTGTACCCTTGGGGAGGTGTGCAGGTTTTGCATTGGTCAATACAAACCAGAGGCTGGGAGACCCTTGTTTCTATACCAGAAGGTGAATGCGACAAGTATGCTCTATGTGGTACAAACTCTGTATGCAGGGCCACTCCCACTCTGGTCTGTGAATGTCTTGAAGGATTTGTACCAAAATATCCAGGAAAATGGAAGGACTCTTATTGGTCTGATGGCTGTGTTAGGATCACTCCCTTAAATTGCAGCAATGATGACTTCAAGAAGGTAACAGGGATAGTGCTGCCTGACACGGCTGCTTCTTGGTATAACAGGACCATGAACCTGCTGGAATGCAAGGAATTCTGTCTGAAGAATTGTTCTTGTACAGCTTATTCCAATTTGGATATCCGCAATGGAGGAAGCGGTTGCTTGATCTGGTTTCATGATCTTATTGACATTAGACAAGGGACACAAGACTTCTATATTCGAATAGCAATTTCAGAGCGAGATGATAACCAGAACAATCATTTGAGTCAGTGGAAGCTGGCAGGCATCATTGTTGGCTCTATGTTGTTCATCATGAGCATAATATTTGGACTAAAATTATTTCGATGGAGAAAAAAACTTAAGGAGCCAGATATATTTTGGTGGAAGGGACGTGATCACAAACGAGAAAAGGAAGACATGGACCTCCCAACATTTGATTTATCAACCATAGTTTTAGCCACCAATCAATTTTCTAGCAGTAATGAATTGGGAAAAGGGGGATATGGATCAGTTTATAAGGGTGTACTTGCAAATGGAACCGAGATTGCGGTGAAGAGACTTTCCAAGAACTCAGACCAAGGGCTGCAGGAGTTCAAAACTGAAGTTCAGCTAATTGCAAAACTTCAGCATCGCAACCTTGTAAAGCTTCTTGGTTGCTGCATTCAGCAAGAAGAGAAACTTTTGATTTATGAGCTCATGCCCAACAGGAGTTTGGACTACATTATTTTTGATGATGCTAGAAGAACGTTGTTAGATTGGGCTAAGCGCTTTCACATTATTCGTGGCGCAGCTCGAGGCCTACTTTATTTGCATCAGGACTCTAGGCTAAGAGTCATTCATAGAGATCTAAAAGCTAGTAATATTCTTCTTGATGAAGACATGAATGCAAAAATATCAGACTTCGGCCTTGCTAGGACATTTGCATGTGATCAGACTGAAGACAAGACAAAAAGAGTGGTGGGAACTCATGGTTATATTTCGCCTGAGTATGCAGTGCGTGGCTCCTTTTCAACGAAATCAGATGTGTTCGCCTTTGGTGTAGTCGTGCTTGAGGTAGTCAGTGGGAGGAGGACTAGAGAGTTCTGTGTCCCAAATCAAAATCTTAACCTTCTTGGATTTGCATGGGAACTATGGAATGAGGAGAGGCCTCTGGAGCTGGTAGATGAGTCGCTGTGCGATTCGGTGAATGAAGCTGAAGCATTGAGATGCATTCAGATAGGGCTGTTATGTGTGCAAGAGAGACCAGAACATAGGCCAAACATGTCAACAGTAGTTCATATGTTGGATGATGAAAAACCATTGCCTCGGCCAAGGTTGCCTGCATTTTATTCACACCAACAAGATTCTACACTGATTGATGGTGAAGATGGTGAGGAAGTTCATTCAGCAAATGAGGTTACCATATCATTGTTAGGGGCAAGGTAG 2100 0.4248 MSRKVEDKWNPIAQLLESGNLVVKDGHNSDHFLWQSFDYPRDTLVPGMKLGWDLVTGLERTLTSSKSIDDPGGGDYTLRIDLHGYPQVFLMNGNTITIRVGPWNGLMFSGATLYLSYTQFVSNEEEVFVRYRPENTSKFIRGVVYPWGGVQVLHWSIQTRGWETLVSIPEGECDKYALCGTNSVCRATPTLVCECLEGFVPKYPGKWKDSYWSDGCVRITPLNCSNDDFKKVTGIVLPDTAASWYNRTMNLLECKEFCLKNCSCTAYSNLDIRNGGSGCLIWFHDLIDIRQGTQDFYIRIAISERDDNQNNHLSQWKLAGIIVGSMLFIMSIIFGLKLFRWRKKLKEPDIFWWKGRDHKREKEDMDLPTFDLSTIVLATNQFSSSNELGKGGYGSVYKGVLANGTEIAVKRLSKNSDQGLQEFKTEVQLIAKLQHRNLVKLLGCCIQQEEKLLIYELMPNRSLDYIIFDDARRTLLDWAKRFHIIRGAARGLLYLHQDSRLRVIHRDLKASNILLDEDMNAKISDFGLARTFACDQTEDKTKRVVGTHGYISPEYAVRGSFSTKSDVFAFGVVVLEVVSGRRTREFCVPNQNLNLLGFAWELWNEERPLELVDESLCDSVNEAEALRCIQIGLLCVQERPEHRPNMSTVVHMLDDEKPLPRPRLPAFYSHQQDSTLIDGEDGEEVHSANEVTISLLGAR 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30826g00006 699 SUPERFAMILY alpha-D-mannose-specific plant lectins 10 69 IPR036426 -
Stsc30826g00006 699 SMART serkin_6 382 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30826g00006 699 Gene3D Hepatocyte Growth Factor 222 299 - -
Stsc30826g00006 699 SUPERFAMILY Protein kinase-like (PK-like) 365 669 IPR011009 -
Stsc30826g00006 699 ProSitePatterns Protein kinases ATP-binding region signature. 388 410 IPR017441 GO:0005524
Stsc30826g00006 699 ProSiteProfiles PAN/Apple domain profile. 224 301 IPR003609 -
Stsc30826g00006 699 PIRSF SRK 1 699 IPR024171 GO:0004674
Stsc30826g00006 699 Gene3D Transferase(Phosphotransferase) domain 1 458 659 - -
Stsc30826g00006 699 Pfam Protein tyrosine and serine/threonine kinase 385 653 IPR001245 GO:0004672|GO:0006468
Stsc30826g00006 699 Pfam S-locus glycoprotein domain 99 202 IPR000858 GO:0048544
Stsc30826g00006 699 CDD STKc_IRAK 388 654 - -
Stsc30826g00006 699 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 640 - -
Stsc30826g00006 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
Stsc30826g00006 699 Pfam PAN-like domain 224 289 IPR003609 -
Stsc30826g00006 699 SMART ntp_6 224 300 IPR003609 -
Stsc30826g00006 699 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 350 457 - -
Stsc30826g00006 699 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 458 660 - -
Stsc30826g00006 699 Gene3D Phosphorylase Kinase; domain 1 355 457 - -
Stsc30826g00006 699 Pfam D-mannose binding lectin 7 66 IPR001480 -
Stsc30826g00006 699 CDD PAN_AP_plant 220 301 - -
Stsc30826g00006 699 ProSiteProfiles Protein kinase domain profile. 382 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30826g00006 Stsc-Chr30826 23912 27037 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30826g00006 360 668 Receptor kinase-like Gene Family AT4G11480 55.414 6.42e-120 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc30826g00006 PK_Tyr_Ser-Thr 2.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30826g00006 - - aip:107611884 1199.5