Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30826g00005 ATGGAAAGCTTCAAGGTTCTTGTTGTGTGCACCCTTTTGATACCGTTCTACTTCATACCAATCTGCAACACACTGAATTCCATTGATCAAGGACAATCTTTGAAGGAAAATGAGACTCTAGTTTCAGAAGATGGAGCTTTTGAGGCAGGGTTCTTCAACTTTGGAGATTCAAATAGGCAATACTTTGGTATATGGTACAACGGTATTTCTCCAAGAACCATTGTATGGGTTGCAAATAGAGATACACCAATTGAAAACTCCTCAGGAGTTTTGAATGTCACTGATGGAGGAAATCTTGTGATTCTTGATGGAACGGGAGCTTCTATATGGTCCTCAAATTCAACATCAAGAACTGCTAAGAAGCCTTTCTTGCAGCTCTTGGACACTGCAAACCTTGTTGTGAAAGATGGAAGCAATAGCCCTCAGAATCTTATTCTATGGCAGAGCTTTGATATACCTGGGGACACTTTTCTACCAGGTATGAAGGTTAGGGCTAACATGGCAAGTGGTAATTATACATCCTTGATATGTTGGAGGGACACACAAGATCCTGCTATAGGTTTGTATGCATACCACATAGATCCTCATGGTTATCCTCAAGTGGTTATCACAAAAGGAGGAACATTAATATACAGAGTAGGTTCTTGGAATGGAAATATGTTATCTGGTGTTCCTTCTGAATCACTGTACAAATCCTTCAATTTGTCCTTTGAATTCAATGATCAAGAAGTGTCTTATAGCTATGGACCCTTCAACAAGTCAATTGTTTCAAGGTACATGGTCACTACTTCAGGCCAAATACAACGTTTCATTTTAGACCAAACCAAAACCTGGCAGCTCTTCATGGCTGGCCCAGTAGACCAGTGTGATAATTATGCCTTCTGCGGATCGAATTCGAATTGTGATGTTTCAAATTCACCAGAGTGTGACTGTCTTCAGGGGTTTGCTCCAAAATCTCAGGAGAAATGGAGTGCTCAGAATTGGTCTGGAGGGTGTGTTAGGAAAGTTAATTTGTCTTGTGACAGCAGAGATGGATTCTTGAAGTTTTCAGGAATGAAAATTCCCGACACATCGAAATCATGGTATAATAGGAGCATGAACCTTGAGGATTGTAAGAACTTTTGTCTGAAAAACTGTTCTTGCACGGCGTGTGCAAATTTAGATGTCAGACATGGCGGAAGCGGCTGCTTGCTTTGGTTCAATGACATTGTGGATGTGAGGAAACAAACCTCTGAAGGACAAGACCTTTACATAAAAGTAGCAGCTTCAGAATTAGACAACAACAAGGGCTTGAACAAGAAGCAACTTGCAGGTATTCTGGTAGGATGTTCATTATTCATCATTGTCATGGTAATTCTTGGAATTGTCATTCATAGGAAGAACAAACTCAAGAAATCAGACATGAACCAACAAATCAGCTGGAAGAATCACAGTATTGACAGAGAGAGGGAAGACATTGACATACCAATATATGATTTATCAACCATAGCTATTGCAACTAGCCACTTCTCAATCAGTAAAAAATTGGGAGAAGGTGGATTTGGACCAGTTTACAAGGGTACATTAACAAATGGGCAAGAAATTGCTGTGAAGAGGTTGAGCCATAGCTCAGGACAAGGACCAAATGAGTTCATTAATGAAGTTAAGCTAATTGCCAATCTTCAACATCGAAATCTTGTGAAGCTTCTCGGGTGTTGCATTCATGGAGATGAGAGGCTTTTGATATATGAATTCATGCCCAACCGAAGCTTGGACTGCTTTATATTTGATCAAGCTAAAAGAAGTTTACTGCATTGGGATCAACGTTTCCAAATTATTCGTGGGATTGCTCGAGGACTTCTCTATCTGCATCAAGATTCTAGATTAAGGATTATTCATAGAGATCTCAAAACCAGCAATATTCTTCTTGATCAAAATATGAATTCAAAAATATCAGATTTTGGTCTCGCTAGGACTTTTGGAGGAGATCAACTCGAAGGCATAACAAAAAGAATAGTGGGAACTCATGGTTATATTTCACCTGAGTATGCTGCTCGTGGGAATTTCTCAGTAAAGTCTGATGTCTTCAGTTTTGGTGTGATTGTGCTAGAGACAATTAGTGGACACAAAAATAGGGAATTCTTTGATGATAATGATCTTGACCTTCTTGGGCACGCATGGAGGCTGTGGTGTGAAGAGAGGCCATTGGAGCTTATAGATGAATCAGTAGCTGATTCAGTTTCTGTAGGAGAACCTGAAGTGTTACGATGCATTAATATAGGGCTTTTATGTGTACAAGAGAGACCAGAGGATAGGCCAGACATGTCAGCCATAGTTCTAATGCTGAATGGTGAGAAACCATTGGCAAGGCCAAGAGAACCTGCTTTTTATCCACACCAGTTTGGCTCTTCATCAGGGAATTGTGCAGTGAATTCAGCTAATGAAATTTCTATCACATTGTTAGATGCTAGGTAG 2454 0.3998 MESFKVLVVCTLLIPFYFIPICNTLNSIDQGQSLKENETLVSEDGAFEAGFFNFGDSNRQYFGIWYNGISPRTIVWVANRDTPIENSSGVLNVTDGGNLVILDGTGASIWSSNSTSRTAKKPFLQLLDTANLVVKDGSNSPQNLILWQSFDIPGDTFLPGMKVRANMASGNYTSLICWRDTQDPAIGLYAYHIDPHGYPQVVITKGGTLIYRVGSWNGNMLSGVPSESLYKSFNLSFEFNDQEVSYSYGPFNKSIVSRYMVTTSGQIQRFILDQTKTWQLFMAGPVDQCDNYAFCGSNSNCDVSNSPECDCLQGFAPKSQEKWSAQNWSGGCVRKVNLSCDSRDGFLKFSGMKIPDTSKSWYNRSMNLEDCKNFCLKNCSCTACANLDVRHGGSGCLLWFNDIVDVRKQTSEGQDLYIKVAASELDNNKGLNKKQLAGILVGCSLFIIVMVILGIVIHRKNKLKKSDMNQQISWKNHSIDREREDIDIPIYDLSTIAIATSHFSISKKLGEGGFGPVYKGTLTNGQEIAVKRLSHSSGQGPNEFINEVKLIANLQHRNLVKLLGCCIHGDERLLIYEFMPNRSLDCFIFDQAKRSLLHWDQRFQIIRGIARGLLYLHQDSRLRIIHRDLKTSNILLDQNMNSKISDFGLARTFGGDQLEGITKRIVGTHGYISPEYAARGNFSVKSDVFSFGVIVLETISGHKNREFFDDNDLDLLGHAWRLWCEERPLELIDESVADSVSVGEPEVLRCINIGLLCVQERPEDRPDMSAIVLMLNGEKPLARPREPAFYPHQFGSSSGNCAVNSANEISITLLDAR 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30826g00005 817 SUPERFAMILY Protein kinase-like (PK-like) 488 793 IPR011009 -
Stsc30826g00005 817 Gene3D Hepatocyte Growth Factor 336 419 - -
Stsc30826g00005 817 Pfam S-locus glycoprotein domain 211 319 IPR000858 GO:0048544
Stsc30826g00005 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Stsc30826g00005 817 ProSiteProfiles Bulb-type lectin domain profile. 25 147 IPR001480 -
Stsc30826g00005 817 SMART ntp_6 341 420 IPR003609 -
Stsc30826g00005 817 SMART serkin_6 503 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30826g00005 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 339 420 - -
Stsc30826g00005 817 Pfam Protein tyrosine and serine/threonine kinase 504 773 IPR001245 GO:0004672|GO:0006468
Stsc30826g00005 817 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Stsc30826g00005 817 CDD STKc_IRAK 509 777 - -
Stsc30826g00005 817 SMART blect_4 31 153 IPR001480 -
Stsc30826g00005 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 467 578 - -
Stsc30826g00005 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 150 - -
Stsc30826g00005 817 Pfam PAN-like domain 340 406 IPR003609 -
Stsc30826g00005 817 PIRSF SRK 1 817 IPR024171 GO:0004674
Stsc30826g00005 817 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 762 - -
Stsc30826g00005 817 Pfam D-mannose binding lectin 73 179 IPR001480 -
Stsc30826g00005 817 Gene3D - 21 150 IPR036426 -
Stsc30826g00005 817 Gene3D Phosphorylase Kinase; domain 1 477 578 - -
Stsc30826g00005 817 ProSiteProfiles Protein kinase domain profile. 503 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30826g00005 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 217 IPR036426 -
Stsc30826g00005 817 Gene3D Transferase(Phosphotransferase) domain 1 579 783 - -
Stsc30826g00005 817 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 579 783 - -
Stsc30826g00005 817 CDD PAN_AP_plant 336 421 - -
Stsc30826g00005 817 CDD B_lectin 32 153 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30826g00005 Stsc-Chr30826 19836 23223 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30826g00005 426 792 Receptor kinase-like Gene Family AT4G23190 50.535 7.69e-119 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc30826g00005 PK_Tyr_Ser-Thr 2.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30826g00005 - - vum:124842963 1199.88