Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30824g00004 ATGGGAAGGGGTAGAAGATTCAAAAAACTATATCTTAGCAAGATTTACACTTTCACATGTGGTAAAAAATCACTATTCAATGATGAACATTCTCAAATTGGAAGTGTTGGCTTTTCAAGGGTGGTTTTAGTGAATGAGCCCGCAGATAAATTTGAAAATTCTTCTGAGAACAATAATAACAACAACTATGCAGATAATGTTGTGTGTTCTACAAAGTACACTGTTGCAAATTTTTTACCAAAATCACTCTTTGAGCAGTTTAGGAGAGTGGCAAACTTCTTTTTCTTAGTGACTGGTGTATTGTCCTTTACCAAGCTTGCACCTTATACAGCTGTGAGTGCTATCTTGCCATTGATTGTTGTCATTACTGCAACAATGGTCAAAGAGGGTATTGAAGATATGCGTCGAAAAAAGCAGGATATTGAGGTGAACAATCGAATGGTTGAAATGCTTAAAGGGAGTGGAACTTTTGAACGTACTGAGTGGAAAAACCTAAAAGTGGGAAACATCGTGAAGGTTGAAAAAGATGAGTTCTTCCCTGCAGACCTACTACTTCTTTCATCAAGTTATGAGGATGCAGTATGTTATGTTGAGACCATGAACTTAGATGGAGAGACAAACTTGAAGTTGAAACAAGGCTTGGAAATAACTTCTTCTTTACATGAGTACGACTTTAGTGATTTTAAAGCTTATATCAAATGTGAAGACCCCAATGCAAACTTGTATTCATTTGTTGGAAGCATGGAGTTTAAGGAGCAAGTGCATGCACTTTCTCCCCAACAACTTCTCTTAAGAGATTCCAAACTCCGTAACACAGACTATATATTTGGAGCTGTCATCTTCACAGGACATGACACAAAGGTTATCCAAAATTCAATTTCTCCTCCTTCGAAAAGAAGCAAGATTGAGAGGAAGATGGATAAAGTTATTTATGTCTTATTTTTTATATTATTCCTAATGTCATTTGTTGGATCAGTTTTCTTTGGCATTACAACTAAAGAAGATTTGAAAAATAATGTGATGAAAAGATGGTATTTGAGGCCAGATGATTCTACAATTTTCTTTGATCCTAAAAGAGCCCCTGCAGCTGCTTTCTTCCATTGTTTGACAGCTTTAATGTTATATAGCTTCTTTATTCCGATCTCCTTGTATGTATCCATAGAAGTTGTTAAAGTCCTTCAGAGCATCTTCATAAACCAAGATATTAATATGTACCATGAAGAAACAGACAAACCGGCACATGCTGTTACTTCAAACTTAAATGAGGAACTTGGCCAAGTGCACACAATTCTTTCTGATAAAACCGGAACTCTAACTTGCAATTCAATGGAGTTCATCAAATGTTCCATTGCTGGAGTAGCTTACGGTCGTGGGGTCACAGAGGTTGAGAAAGCCATGAATAGAAGAAATGGATTAGAATTTGATGACATAATGAACTCTCCAGACAGAAAGGCACCCATCAAAGGTTTTAATTTTACAGACGAAAGAATAATGGACGGAAATTGGGTTAATGAACCTCATGCAAATGTTATCCGAAATTTTTTTCGTTTATTGGCAATTTGTCATACCGCTATACCAGAAGTTGATGAAGACACAGGAAAGGTCTCTTATGAGGCTGAATCTCCAGATGAAGCAGCATTTGTGATTGCAGCAAAAGAAGTTGGCTTTGAATTCTACAAAAGAACTCAAACTAGTTTATCAATATTTGAGTTGGATCCAGTTTCTCAACAAAAAGTTAAAAGGACATACACGCTTCTCAATGTTTTAGAATTCAATAGCACAAGAAAGCGAATGTCTGTCATAGTGAAAGATGAAAAGGGAAGAATTTTGCTACTTTGTAAAGGTGCTGACAGTGTTATGTTTGAAAGACTGGCTAACAACGGAAGAGAGTTTGAAGAGAACACCTTGGAACATGTGCATGAATATGCCGATGCAGGTTTAAGGACATTGATACTAGCGTTCCGTGAACTTGATGAACAAGGGTATAAGGAGTTTGATGCTAAATTTACCGAAGCAAAAAATTCAATTTCAGAAGAGCGAGAAACAATGATTGAGGAAGTATCAGATAATATCGAGAGGAATATGGTTCTACTTGGTGCCACTGCCATAGAAGACAAGCTCCAGCATGGGGTTCCAAATTGCATTGACAAGCTTTCTCAAGCAGGAATTAAGATTTGGGTTTTGACAGGGGATAAAATGGAAACTGCCATTAATATTGGTTTACTTAGAGAAGGAATGAAGCAAATTATAGTTCATTTGGATACTCCAGAAATTCGATCCCTAGAGAAGGGTGGGGATAAGACAGCTATTTCCAGGGCTTCAAGGGATAGTATTAAACATCAACTATCACAAGGTGCTGAACAACTTACGGCTGCTAGCGGAACCTCTGAGCAAGCATTTGCTCTAATTATTGATGGAAAATCACTTACTTATGCTTTAGAGGATGATATGAAGAACTCTTTTCTAGATTTAGCAACTAGTTGTGCATCTATTATTTGTTGTCGCGTGTCTCCAAAGCAAAAAGCATTGGTCACTAGACTTGTAAAATTCAGAACCGGTAAAACTACATTAGGTATCGGGGATGGAGCTAATGATGTTGGAATGCTTCAAGAAGCAGACATAGGGATTGGAATAAGTGGTGTTGAAGGGATGCAGGCTGTTATGTCTAGTGATGTTGCAATTGCACAATTTTGTTATTTGGAACGACTACTTCTTGTGCATGGACATTGGTGTTATCGAAGAATTTCATCAATGATATGTTACTTCTTTTACAAGAATATCACATTTGGCTTCACTTTATTCTTGTTTGAGGTTCATGCATCATTTTCTGGAGAACCTGCATATAATGATTGGTTTTTGTCTTTGTATAATGTCTTTTTTTCGTCACTTCCAGTCATTGCCCTTGGGGTATTTGACCAAGATGTATCAGCTCGGTATTGTCTGAGGTTTCCTATGTTATATCGAGAAGGTGTGGAAAACATCCTCTTTAGCTGGCGTCCAATAATTAGTTGGATGGTTAATGGATTTATTAGTTCTATAATAATTTTCTTCTTCTGCTCAAAAGCTATGGAGATTCAAGCATTTGATAAAGGAGGAAGGACTGCAGGAAGAGATATACTAGGAGCAACAATGTACACTTGTGTGGTTTGGGTAGTAAACTTGCAAATGGCACTTGCTATAAGTTATTTCACATTGATTCAACATGTTTTAATATGGGGATCCATTGTTATCTGGTATGTTTTCCTCTTGGCATATGGAGCAATGGCCTCATCATTTTCTGGAAATGCTTATCAAGTCTTTGCTGAAACTCTTGCTTCGACTCCTTCCTATTGGTTGTTGGTATTTTTTGTAGTAATCACAACACTTGTACCATACTTTACTTTCTCTGCACTACAAATGCGATTCTTTCCCATGTATCATGAAATAGTACAATGGTTGAGGCACAAAGGAAAGACAAACGATCCCGAGTTTTGCGCTATGGTGCGACAAAGTTCATTGAGGCCGACAACTGTTGGATCAACAGCACGTAGAGCTGCCAAGACTAATAGCCTTAGCCTTAGAGGCAGCACCACTGACCATAGATGA 3585 0.3755 MGRGRRFKKLYLSKIYTFTCGKKSLFNDEHSQIGSVGFSRVVLVNEPADKFENSSENNNNNNYADNVVCSTKYTVANFLPKSLFEQFRRVANFFFLVTGVLSFTKLAPYTAVSAILPLIVVITATMVKEGIEDMRRKKQDIEVNNRMVEMLKGSGTFERTEWKNLKVGNIVKVEKDEFFPADLLLLSSSYEDAVCYVETMNLDGETNLKLKQGLEITSSLHEYDFSDFKAYIKCEDPNANLYSFVGSMEFKEQVHALSPQQLLLRDSKLRNTDYIFGAVIFTGHDTKVIQNSISPPSKRSKIERKMDKVIYVLFFILFLMSFVGSVFFGITTKEDLKNNVMKRWYLRPDDSTIFFDPKRAPAAAFFHCLTALMLYSFFIPISLYVSIEVVKVLQSIFINQDINMYHEETDKPAHAVTSNLNEELGQVHTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVEKAMNRRNGLEFDDIMNSPDRKAPIKGFNFTDERIMDGNWVNEPHANVIRNFFRLLAICHTAIPEVDEDTGKVSYEAESPDEAAFVIAAKEVGFEFYKRTQTSLSIFELDPVSQQKVKRTYTLLNVLEFNSTRKRMSVIVKDEKGRILLLCKGADSVMFERLANNGREFEENTLEHVHEYADAGLRTLILAFRELDEQGYKEFDAKFTEAKNSISEERETMIEEVSDNIERNMVLLGATAIEDKLQHGVPNCIDKLSQAGIKIWVLTGDKMETAINIGLLREGMKQIIVHLDTPEIRSLEKGGDKTAISRASRDSIKHQLSQGAEQLTAASGTSEQAFALIIDGKSLTYALEDDMKNSFLDLATSCASIICCRVSPKQKALVTRLVKFRTGKTTLGIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDVAIAQFCYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTLFLFEVHASFSGEPAYNDWFLSLYNVFFSSLPVIALGVFDQDVSARYCLRFPMLYREGVENILFSWRPIISWMVNGFISSIIIFFFCSKAMEIQAFDKGGRTAGRDILGATMYTCVVWVVNLQMALAISYFTLIQHVLIWGSIVIWYVFLLAYGAMASSFSGNAYQVFAETLASTPSYWLLVFFVVITTLVPYFTFSALQMRFFPMYHEIVQWLRHKGKTNDPEFCAMVRQSSLRPTTVGSTARRAAKTNSLSLRGSTTDHR 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30824g00004 1194 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 497 703 IPR023299 GO:0000166
Stsc30824g00004 1194 Gene3D - 544 698 IPR023299 GO:0000166
Stsc30824g00004 1194 MobiDBLite consensus disorder prediction 1169 1194 - -
Stsc30824g00004 1194 FunFam Phospholipid-transporting ATPase 124 293 - -
Stsc30824g00004 1194 PRINTS P-type cation-transporting ATPase superfamily signature 859 878 - -
Stsc30824g00004 1194 PRINTS P-type cation-transporting ATPase superfamily signature 431 445 - -
Stsc30824g00004 1194 ProSitePatterns E1-E2 ATPases phosphorylation site. 433 439 IPR018303 -
Stsc30824g00004 1194 SUPERFAMILY Calcium ATPase, transmembrane domain M 62 1137 IPR023298 -
Stsc30824g00004 1194 SUPERFAMILY Calcium ATPase, transduction domain A 153 289 IPR008250 -
Stsc30824g00004 1194 Pfam Phospholipid-translocating ATPase N-terminal 53 114 IPR032631 -
Stsc30824g00004 1194 SFLD p-type atpase 414 910 IPR044492 -
Stsc30824g00004 1194 Gene3D - 699 897 IPR023214 -
Stsc30824g00004 1194 MobiDBLite consensus disorder prediction 1169 1188 - -
Stsc30824g00004 1194 FunFam Phospholipid-transporting ATPase 540 698 - -
Stsc30824g00004 1194 Pfam Phospholipid-translocating P-type ATPase C-terminal 887 1137 IPR032630 -
Stsc30824g00004 1194 SFLD Haloacid Dehalogenase 414 910 - -
Stsc30824g00004 1194 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 54 1148 - -
Stsc30824g00004 1194 NCBIfam HAD-IC family P-type ATPase 831 938 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30824g00004 1194 SUPERFAMILY HAD-like 419 903 IPR036412 -
Stsc30824g00004 1194 FunFam Phospholipid-transporting ATPase 698 899 - -
Stsc30824g00004 1194 NCBIfam phospholipid-translocating P-type ATPase 63 1144 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Stsc30824g00004 1194 Gene3D - 118 294 - -
Stsc30824g00004 1194 CDD P-type_ATPase_APLT_Dnf-like 65 1008 - -
Stsc30824g00004 1194 Pfam Cation transport ATPase (P-type) 531 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30824g00004 Stsc-Chr30824 13623 20007 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30824g00004 10 1186 Primary Pumps ATPases AT1G68710 69.565 0.0 1776
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30824g00004 K01530 - gmx:100811892 1916.74