Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30822g00005 ATGGGAAAAGCACCTTGCTGTGACAAACATGGAGTGAAGAGGGGAGCTTGGACACCTGAAGAAGATGAGGCTTTGGTTGAGCATATCAAGAAGCATGGAGAAGGAAGTTGGCGCACTCTCCCTAAACAGGCTGGACTACTTCGATGTGGAAAAAGTTGTAGGCTGCGGTGGATTAATTATCTAAGACCTGGCATTAAGCGTGGTCCATTTACTTCTGAAGAAGAGACTAGTATCATTCAACTTCACGCCATGCTTGGCAACAGGTGGGCTGCTATAGCTTCCCAACTGCCAGGAAGAACAGACAATGAGATCAAGAACTACTGGAACACTCATCTAAAGAAGAATCTTCACCAACGGTTGGGACGCACCGGAGGGACTAATCAACCTTGTCTCAGCCCTATTGCAGGGATTGTCAAGTCGGAATCTCCTTTGACACGGCATATGGTACAATGGGAAAGTGCTAGAGTTGAGGCTGAGGCAAGGTTGTCAATGGAATCCTCATTGAACAATTCATGGTCGCCAGCTAAAACATGCTCTGATTACTATCTTAGATTATGGAATTCTGAGGTTGGAGAGTCGTTTCGGGGGATCAAGGGAAAGGAACGAGTAGGTGAGAGTCATAGCCTTGTCTCACAGGCTTCAACACCATCATCATCATCAAAATTGGAGTCATGTTCAGATGCATCACTGCATTTGAAAAGCACTGTTCAAGAACAAATAAGTAGCTGCAAACCAAAGCTTGAATATGACACAGGTGGATCGGATTCAGGCAACTATGAATACCTTGATACTTCTGATTCCGCATTCAAACAATATCTGGATATGCCTGATGATGATATAGAATTCTTGGACCACACTGACAGTTTCCTGAACCCTCCTGATGATGATGATAATGATGATGATAGATGTGACTAA 915 0.4426 MGKAPCCDKHGVKRGAWTPEEDEALVEHIKKHGEGSWRTLPKQAGLLRCGKSCRLRWINYLRPGIKRGPFTSEEETSIIQLHAMLGNRWAAIASQLPGRTDNEIKNYWNTHLKKNLHQRLGRTGGTNQPCLSPIAGIVKSESPLTRHMVQWESARVEAEARLSMESSLNNSWSPAKTCSDYYLRLWNSEVGESFRGIKGKERVGESHSLVSQASTPSSSSKLESCSDASLHLKSTVQEQISSCKPKLEYDTGGSDSGNYEYLDTSDSAFKQYLDMPDDDIEFLDHTDSFLNPPDDDDNDDDRCD 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30822g00005 304 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc30822g00005 304 CDD SANT 69 112 IPR001005 -
Stsc30822g00005 304 Gene3D - 69 129 - -
Stsc30822g00005 304 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc30822g00005 304 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Stsc30822g00005 304 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 233 - -
Stsc30822g00005 304 CDD SANT 16 61 IPR001005 -
Stsc30822g00005 304 FunFam Myb transcription factor 11 67 - -
Stsc30822g00005 304 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc30822g00005 304 Gene3D - 14 66 - -
Stsc30822g00005 304 SMART sant 13 63 IPR001005 -
Stsc30822g00005 304 SMART sant 66 114 IPR001005 -
Stsc30822g00005 304 FunFam MYB transcription factor 69 116 - -
Stsc30822g00005 304 MobiDBLite consensus disorder prediction 283 304 - -
Stsc30822g00005 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Stsc30822g00005 304 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc30822g00005 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30822g00005 Stsc-Chr30822 13537 15106 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30822g00005 1 293 MYB Transcription Factor Family AT3G61250 55.410 5.15e-98 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30822g00005 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30822g00005 K09422 - gmx:100782075 419.468