Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30822g00003 ATGGGGTTGCAGCCTCTTGAAAAAGCAAAACCAAAATACAAGAAGGGTTTATGGTCACCTGAAGAGGACAATAAGCTCAAAACCCACATTGTAAAGCATGGTCATGGCTGCTGGAGTTCTGTTCCTATTAAGGCAGGTTTACAAAGGAATGGAAAAAGTTGCAGACTAAGGTGGATTAACTATCTAAGACCAGGATTAAAGAGGGGTCTGTTCAGCAAACAAGAGGAGGAGACAATCCTCTCCCTTCACCAGATGCTGGGAAACAAGTGGTCTCAAATAGCACAGCATTTACCAGGAAGAACAGATAATGAGATAAAGAATTATTGGCACTCATATTTGAAAAAGAAAGTGATGGCCAATACTAAGGAAATGGAATCTCATGAACAAGTTCACTATGCTACCTCATCAAGCTCAGAAACCATGGATTCTTCTTCACAAGCTGTGCAGAATCTTGCAACACAAGGCACACACAATAATTATAACTTCACCAATGAGGCTTGTCAAAGTTCCTCCTTACCAAAACTTCTTTTTGCTGAGTGGCTTACACTGGATCATGTGCAATGTGGTGGAAGCTCTGCTAATTCATATGATGAATCTTTGGGTTTGAAGAATGGATTTGACAGTCAAATCTCGTCTTTTCAAGAATCTGCTACAGTAAATGATACTTTGTCACAAGGACCCTTTGGAGGAGATTATCATAATAATAGTCTAATTCATAATTCAGCCTCAGAGGTGTACAATTCACAGCTTAAGTTTGGAACAACAATGGAGGAAAGTGGATTTATCCATTGTATGCCTGGGGTTGATTTTAGTGGCAATTTCAACATGAGCAATGATACCATGTATATATGA 852 0.3932 MGLQPLEKAKPKYKKGLWSPEEDNKLKTHIVKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGLFSKQEEETILSLHQMLGNKWSQIAQHLPGRTDNEIKNYWHSYLKKKVMANTKEMESHEQVHYATSSSSETMDSSSQAVQNLATQGTHNNYNFTNEACQSSSLPKLLFAEWLTLDHVQCGGSSANSYDESLGLKNGFDSQISSFQESATVNDTLSQGPFGGDYHNNSLIHNSASEVYNSQLKFGTTMEESGFIHCMPGVDFSGNFNMSNDTMYI 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30822g00003 283 SMART sant 14 64 IPR001005 -
Stsc30822g00003 283 SMART sant 67 115 IPR001005 -
Stsc30822g00003 283 Gene3D - 15 67 - -
Stsc30822g00003 283 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Stsc30822g00003 283 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Stsc30822g00003 283 CDD SANT 18 62 IPR001005 -
Stsc30822g00003 283 CDD SANT 71 113 IPR001005 -
Stsc30822g00003 283 Gene3D - 70 142 - -
Stsc30822g00003 283 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc30822g00003 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc30822g00003 283 FunFam MYB transcription factor 70 143 - -
Stsc30822g00003 283 FunFam MYB transcription factor 12 68 - -
Stsc30822g00003 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Stsc30822g00003 283 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Stsc30822g00003 283 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Stsc30822g00003 283 PANTHER MYB DOMAIN PROTEIN 55 7 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30822g00003 Stsc-Chr30822 8206 9749 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30822g00003 8 202 MYB Transcription Factor Family AT3G48920 53.061 3.60e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30822g00003 Myb_DNA-binding 1.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30822g00003 K09422 - gmx:778167 389.423