Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30818g00003 ATGGGTGGCATCAGCCTTGAAGAGATAAAGAACGAGCAAGTCGATCTGGAACGAATTCCAATTGAGGAAGTGTTTGAGCAGCTGAAATGTTCAAGAGCAGGTTTAACCGCAGACGAAGGTGCCAACCGCCTTCAAGTCTTTGGACCAAACAAATTGGAAGAGAAAAAAGAGAGCAAGTTTTTGAAGTTCTTGGGGTTTATGTGGAACCCATTGTCATGGGTCATGGAAGCTGCTGCTATAATGGCAATTGCATTGGCAAATGGAGGAGGAAGGCCCCCTGATTGGCAAGACTTTGTGGGAATCATTGCTCTTTTGGTCATTAACTCCACAATCAGTTTCATTGAAGAAAACAATGCTGGGAATGCTGCTGCTGCTCTCATGGCTGGTTTGGCTCCTAAAACCAAGGTACTAAGAGATGGGCATTGGAGTGAACAAGATGCTGCAATTTTAGTCCCAGGAGACATAATCAGCATTAAATTAGGAGATATCATTCCGGCTGATGCTCGTCTTCTTGAGGGCGATCCTCTGAGTGTTGATCAGTCTGCTTTAACAGGAGAATCTCTTCCGGTGACGAAGAACCCCACCGACGAAGTATTTTCTGGATCAACAGTCAAGAAGGGTGAGATAGAAGCTGTTGTGATTGCCACCGGTGTTCACACTTTCTTTGGTAAAGCAGCTCACCTTGTAGACAGCACTAACCAAGTTGGACACTTCCAGAAAGTGCTTACAGCAATTGGTAACTTCTGCATTTGCTCGATTGCCGTCGGAATTCTCATCGAGCTCATAGTCATGTACCCGATACAGCACCGGAGGTACAGAGATGGAATTGACAATCTGTTGGTCCTCTTGATCGGAGGAATTCCGATTGCCATGCCGACTGTTTTGTCCGTCACTATGGCTATTGGCTCTCACAGGCTGTCTCAGCAGGGTGCAATCACGAAACGTATGACGGCTATTGAGGAAATGGCTGGGATGGATGTCCTCTGCAGTGACAAAACCGGGACCTTGACGTTGAATAAGCTCAGTGTTGATAGAAACTTGATTGAGGTGTTTGCTAAGGGTGTTGAGAAGGAGTATGTTATCCTTCTTGCTGCAAGGGCCTCTAGGACCGAAAATCAGGATGCTATAGATGCTGCAATTGTTGGGATGCTTGCTGATCCAAAAGAGGCTCGAGCTGGGATCAGGGAGGTCCATTTTCTTCCATTCAATCCTGTGGACAAGAGGACTGCTCTAACGTACATTGATTCTGATGGAAATTGGCACCGTGCGAGCAAAGGGGCTCCCGAGCAGATCATAACACTTTGCAACTGCAAAGAGGATGTCAGGAAAAAGGTTCATGCAGTGATTGACAAGTTTGCAGAACGCGGACTTCGGTCTTTAGGTGTTGCAAGACAGGAAGTACCTGAGAAATCAAAAGATAGTCCAGGTGGACCATGGCAATTTGTTGGTCTGCTACCACTCTTTGATCCTCCCAGGCATGACAGTGCCGAAACCATTAGAAGAGCACTTAACCTCGGTGTAAATGTTAAGATGATTACTGGGGATCAGCTCGCTATCGGCAAGGAAACTGGCCGAAGGCTTGGAATGGGAACAAACATGTATCCATCATCGGCATTGCTTGGCCAAGACAAGGATGCTTCTATTTCAGCTCTTCCAGTTGATGAGTTAATTGAGAAGGCTGATGGATTTGCTGGAGTGTTTCCTGAACACAAATATGAAATTGTTAAGAGGCTGCAAGAGAGGAAGCACATATGTGGAATGACGGGAGATGGTGTAAACGACGCCCCCGCATTGAAGAAAGCTGATATTGGAATTGCTGTTGCTGATGCTACAGATGCTGCAAGAAGTGCCTCTGATATTGTCCTCACTGAGCCTGGTTTGAGTGTCATTATCAGTGCTGTGCTCACTAGCAGGGCTATTTTTCAGAGGATGAAGAACTATACTATCTATGCTGTGTCAATTACTATTCGTATTGTGTTTGGCTTCATGTTCATTGCATTGATCTGGAAGTTTGATTTTGCACCCTTCATGGTTTTGATTATTGCTATACTAAATGATGGTACCATTATGACAATTTCCAAGGATCGAGTGAAGCCATCACCGATGCCTGACAGCTGGAAACTGAGGGAGATATTTGCTACCGGCATTGTGTTAGGCAGTTACATGGCATTAATGACAGTAGTATTTTTCTGGATTATGAAAGATACCGACTTCTTCCCGAACAAGTTTGGTGTGAGGCATATTAGAAACAGCCCTGATGAGATGATGGCAGCTTTGTATCTTCAAGTCAGTATCATAAGTCAGGCTCTAATTTTCGTCACCAGGTCTCGCAGCTGGTCCTATGTCGAAAGACCTGGTCTTCTCCTACTCGGCGCTTTCTTGATTGCTCAGCTGGGAATGGGATGGGGTTGGGCTGGTGTAATTTGGCTCTACAGTTTAGTGACATACTTCCCTCTTGATTTGCTCAAATTCGCAATCCGTTATATTCTTAGTGGAAAGGCATGGGATAATCTTTTGGAGAACAAGACTGCCTTCACTACGAAGAAAGATTACGGAAAAGAAGAGAGGGAAGCTCAGTGGGCTGCAGCGCAGAGAACACTCCATGGTCTTCAGCCTCCCGAAACCTCTAACCTTTTCAACGACAAAAATAGCTACAGGGAGCTTTCCGAGATTGCGGAGCAAGCAAAGAGACGCGCTGAGGTTGCAAGGCTTAGGGAGCTTCATACTCTAAAGGGACACGTGGAGTCCGTCGTGAAGCTCAAGGGACTTGACATTGATACTATTCAGCAGCACTACACTGTTTAA 2805 0.457 MGGISLEEIKNEQVDLERIPIEEVFEQLKCSRAGLTADEGANRLQVFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGRPPDWQDFVGIIALLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGHWSEQDAAILVPGDIISIKLGDIIPADARLLEGDPLSVDQSALTGESLPVTKNPTDEVFSGSTVKKGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGILIELIVMYPIQHRRYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDRNLIEVFAKGVEKEYVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSDGNWHRASKGAPEQIITLCNCKEDVRKKVHAVIDKFAERGLRSLGVARQEVPEKSKDSPGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDASISALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLREIFATGIVLGSYMALMTVVFFWIMKDTDFFPNKFGVRHIRNSPDEMMAALYLQVSIISQALIFVTRSRSWSYVERPGLLLLGAFLIAQLGMGWGWAGVIWLYSLVTYFPLDLLKFAIRYILSGKAWDNLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPETSNLFNDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30818g00003 934 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Stsc30818g00003 934 CDD P-type_ATPase_H 34 824 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc30818g00003 934 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Stsc30818g00003 934 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Stsc30818g00003 934 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
Stsc30818g00003 934 PRINTS P-type cation-transporting ATPase superfamily signature 588 607 - -
Stsc30818g00003 934 PRINTS P-type cation-transporting ATPase superfamily signature 611 623 - -
Stsc30818g00003 934 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Stsc30818g00003 934 Gene3D - 341 488 IPR023299 GO:0000166
Stsc30818g00003 934 NCBIfam HAD-IC family P-type ATPase 101 346 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30818g00003 934 NCBIfam HAD-IC family P-type ATPase 563 678 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30818g00003 934 Gene3D - 94 799 - -
Stsc30818g00003 934 Pfam E1-E2 ATPase 131 308 - -
Stsc30818g00003 934 Gene3D - 132 216 - -
Stsc30818g00003 934 FunFam Plasma membrane ATPase 132 216 - -
Stsc30818g00003 934 PRINTS H+-transporting ATPase (proton pump) signature 445 463 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30818g00003 934 PRINTS H+-transporting ATPase (proton pump) signature 619 644 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30818g00003 934 PRINTS H+-transporting ATPase (proton pump) signature 560 576 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30818g00003 934 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30818g00003 934 PRINTS H+-transporting ATPase (proton pump) signature 760 781 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30818g00003 934 FunFam Plasma membrane ATPase 341 488 - -
Stsc30818g00003 934 PANTHER CALCIUM-TRANSPORTING ATPASE 18 866 - -
Stsc30818g00003 934 Coils Coil 885 905 - -
Stsc30818g00003 934 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Stsc30818g00003 934 NCBIfam plasma-membrane proton-efflux P-type ATPase 34 798 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc30818g00003 934 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Stsc30818g00003 934 FunFam Plasma membrane ATPase 481 636 - -
Stsc30818g00003 934 SFLD p-type atpase 311 639 IPR044492 -
Stsc30818g00003 934 Gene3D - 883 934 - -
Stsc30818g00003 934 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 830 IPR023298 -
Stsc30818g00003 934 Gene3D - 326 625 IPR023214 -
Stsc30818g00003 934 SFLD Haloacid Dehalogenase 311 639 - -
Stsc30818g00003 934 Pfam haloacid dehalogenase-like hydrolase 325 602 - -
Stsc30818g00003 934 SUPERFAMILY HAD-like 325 635 IPR036412 -
Stsc30818g00003 934 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30818g00003 Stsc-Chr30818 8242 17578 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30818g00003 5 934 Primary Pumps ATPases AT4G30190 82.347 0.0 1589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30818g00003 K01535 - gmx:100791692 1728.38