Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30810g00006 ATGTTTCCCACAAACTTGTTCGATTCTCATCAGCAGCACCTGTTGCTTGATATGTCATCGTCGTCTCACAATAATAATGAGAGTGATTTGGGAATAAGGACCGGAGATGACGATGAGTTCTTCGACATTAAATCTGCTACTGAGATCATGGACGCTCCTTCCGGTGATGAGCAAGATCCCAACCAACGACCCAAAAAGAAGGGCTACCATCGCCACACACAGCACCAAATACAAGAAATGGAAGCGTTCTTCAAGCAGTGCCCACACCCAGATGACAAGCAGAGAAAGGAGCTGAGCCGTGAGCTGGGATTAGAGCCATTGCAAGTGAAGTTTTGGTTCCAAAACAAGCGGACCCAGATGAAGGCACAACATGAGCGGCACGAGAACGCTATATTAAAGGCAGAGAATGAGAAGCTTCGTGCTGAGAACAGCAGATACAAGGAGGCACTAAGCAATGCTACTTGCCCCAACTGTGGAGGTCCTGCTGCCCTTGGTGAAATGTCCTTTGACGAACAACACCTCCGGATTGAGAATGCTCGTCTCAAACAAGAGATTGATAGGATTTCAGCAATAGCGGCCAAATATGTTGGGAGGCCGGTGACTTCGTCTCACAATAACAATCCCATGGCTTCTCATTCTCGCTCGCTTGATCTTGGAGTTGGTATTAGCTACGGTGGAGGAGCACAGCCCTCAGCCGGTGGCGGCATGGTTGGAGAGATGTACGGTGGAAGTGAGCTTCTGAGGAGTCTCCCAGTTCCTTGTGATTCTGAGAAACCCAGGATTGTGGAGCTTGCTGTGGCTGCCATGGAGGAACTAACAAGACTAGGCCAGGTTGGAGATCCTTTGTGGGTCCAAAGCAACCAGCATAGTACTGAGATTCTAAACGAAGATGAATACTTGAGGACTTTCCCTCCTAGAGGTCTAGGCCCCAAAGCATTGGGCTTGAGATCTGAATCGTCCAGGGAATCCGCTGTGGTTATGATGAATCACACCAAACTCGTTGAGATACTAATGGATGTGAACCAATGGTCAACAATGTTTTGTGGTATTGTGTCAAGAGCGTTGACACTTGAAGTGCTTTCAACGGGTGTGGCAGGAAACTACAACGGAGCCTTGCAAGTGATGTCAGCTGAGTTCCAGGTGGCATCACCGCTTGTTGCAAGCAGAGAGAACTATTTCGTGAGGTACTGTAAAGAGCACCCGGATGGGAGATGGGCAGTTGTAGATGTGTCATTGGAGAATGATAATAATGGCAAGGTGAGAGGAAGCAGCAGAAGAAGGCCCTCTGGGTGCATAATTGAAGAACTCCCAAATGGCTACTCCAAGGTCACATGGATTGAGCATGTTGAGGTGGATGACACAGCGGTGCACACCATATACAAGCCATTAGTCAAGTGTGGCCTCGCCTTTGGAGCTAAGAGGTGGATCGCCACATTACAGAGACAATGCGAACGTCTTGCTAGTTACATCGGAGGAGGAGGAGGAGCAGGGGAGCTCTGTGGTACGAGCTCGGAGGGAAGGAGGAGCATGCTGAAGCTGGCTGAGAGAATGGTGATGAGCTTCTGCACTGGCGTGGGAGCTTCAACTGCACATGCATGGACAACTCTGTCGTCGGATATGGATGATGTGAGGGTTATGACCAGGAAGAGCATGGATGACCCTGGAAGACCCCCTGGGATTGTCCTCTGCGCTGCTACTTCCTTCTCCCTCCCTCTCCCTCCCAACACTCTCTTCCATTTTCTCAGAGATCAAAACTCCCGAAACCAGTGGGATATTCTCTCCAACGGAGGTCTTGTTCAAGAAATCGCTCACATATCAACCGCTTCCAACTCCCTCTCTCTGCTTCGCGTCAATAGTGTAAATTCGAGCCAAAGCAACATGCTGATACTTCAGGAGAGTTGCAGCGACTGCAGTGGCTCCTATGTGGTATACGCACCGGTGGACATGGTTGCCATGAATGTGGTTCTTAGTGGAGGGGATCCAGATTACGTGGCCCTGCTTCCCTCGGGTTTTGCCATTCTTCCTGATGGCCCTCCTGCTTCTTCTGGAGGCTCTCTCCTCACGGTAGCTTTTCAGATCTTGGTTGACTCCGCCCCAACCGCCAAGCTATCTCTGGGTTCAGTGGCCACCGTTAACACTTTAATTAAGTGCACCGTTGAAAGGATCAAAGCTGCTGTCATTTCAGACCACCACCACCCCCTCATTTCACAACCTACCTAG 2220 0.5 MFPTNLFDSHQQHLLLDMSSSSHNNNESDLGIRTGDDDEFFDIKSATEIMDAPSGDEQDPNQRPKKKGYHRHTQHQIQEMEAFFKQCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAENEKLRAENSRYKEALSNATCPNCGGPAALGEMSFDEQHLRIENARLKQEIDRISAIAAKYVGRPVTSSHNNNPMASHSRSLDLGVGISYGGGAQPSAGGGMVGEMYGGSELLRSLPVPCDSEKPRIVELAVAAMEELTRLGQVGDPLWVQSNQHSTEILNEDEYLRTFPPRGLGPKALGLRSESSRESAVVMMNHTKLVEILMDVNQWSTMFCGIVSRALTLEVLSTGVAGNYNGALQVMSAEFQVASPLVASRENYFVRYCKEHPDGRWAVVDVSLENDNNGKVRGSSRRRPSGCIIEELPNGYSKVTWIEHVEVDDTAVHTIYKPLVKCGLAFGAKRWIATLQRQCERLASYIGGGGGAGELCGTSSEGRRSMLKLAERMVMSFCTGVGASTAHAWTTLSSDMDDVRVMTRKSMDDPGRPPGIVLCAATSFSLPLPPNTLFHFLRDQNSRNQWDILSNGGLVQEIAHISTASNSLSLLRVNSVNSSQSNMLILQESCSDCSGSYVVYAPVDMVAMNVVLSGGDPDYVALLPSGFAILPDGPPASSGGSLLTVAFQILVDSAPTAKLSLGSVATVNTLIKCTVERIKAAVISDHHHPLISQPT 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30810g00006 739 FunFam Homeobox-leucine zipper protein HDG1 54 139 - -
Stsc30810g00006 739 ProSiteProfiles 'Homeobox' domain profile. 63 123 IPR001356 GO:0003677
Stsc30810g00006 739 SMART START_1 263 485 IPR002913 GO:0008289
Stsc30810g00006 739 ProSiteProfiles START domain profile. 254 488 IPR002913 GO:0008289
Stsc30810g00006 739 Coils Coil 117 152 - -
Stsc30810g00006 739 CDD START_ArGLABRA2_like 258 484 - -
Stsc30810g00006 739 Gene3D - 53 139 - -
Stsc30810g00006 739 SUPERFAMILY Homeodomain-like 53 123 IPR009057 -
Stsc30810g00006 739 SUPERFAMILY Bet v1-like 505 723 - -
Stsc30810g00006 739 ProSiteProfiles START domain profile. 533 616 IPR002913 GO:0008289
Stsc30810g00006 739 CDD homeodomain 66 124 IPR001356 GO:0003677
Stsc30810g00006 739 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 62 726 IPR042160 -
Stsc30810g00006 739 SMART HOX_1 65 127 IPR001356 GO:0003677
Stsc30810g00006 739 FunFam Homeobox-leucine zipper protein GLABRA 2 263 484 - -
Stsc30810g00006 739 MobiDBLite consensus disorder prediction 48 74 - -
Stsc30810g00006 739 ProSitePatterns 'Homeobox' domain signature. 98 121 IPR017970 GO:0000981|GO:0006355
Stsc30810g00006 739 Pfam Homeodomain 66 121 IPR001356 GO:0003677
Stsc30810g00006 739 Pfam START domain 264 485 IPR002913 GO:0008289
Stsc30810g00006 739 Gene3D - 318 485 IPR023393 -
Stsc30810g00006 739 SUPERFAMILY Bet v1-like 256 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30810g00006 Stsc-Chr30810 23900 26541 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30810g00006 1 729 Homeobox Transcription Factor Family AT4G04890 71.258 0.0 1052
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc30810g00006 START 7.9e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30810g00006 K09338 - gmx:100815499 1085.48