Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30810g00003 ATGGCTACTCAGCAACAACAAGAGCCTCTTCTAAACAATAATAAACCCCAGAAATCTCTATCAAGAACAGCTTGGTTACTAATCCTCACAACTATAGTTGGAGTTGGTATCCTCGCCTCAACAGCCCTTATTGCTAATAGCTATTCAAATCTCAGCATAATCAAACCCAGTTCCGATCTCTGTCAACATGCCGTTAACAGGGAAACCTGCTTAGCCCATGTCTCTGAAATAGCACCCAAAGGCCAAATCCTGGCTACCACAAAAGACCAAAACTACAATCTTCTCCAATCCTTCCTTGTAAAGTCCACGTCAGCCATCCAAGAAGCCATGGCCACGGCCAACGCCGTCAAGATCCGCCTCAACGCCACCCCACGCCAGCAAGGAGCTTTGCAGCTCTGTGCAGACCTCATGGACTTGTCCACTTCCAGAGTATACGACTCCCTCGTGGCTCTCACTAACCGCACCACTCTCTCCCTCCATGACGCACACACATGGCTCAGCACCGTCCTCACCAACCATGCCACTTGCTTGGATTCCTTAGACGGCTCTGCTCGTGCCATCATGGAGCCTCAACTCTCCGACCTCATGTCCAGGGCAAGAACCTCTCTCGCCATGCTTGTTTCCGTCTTGCCACCACCACCAAAGGGCGGCGATGAGCAACTGAACGGAGAGTTTCCCTCGTGGGTGACACGCAGCGATCGGAGGCTTTTGGAGTCTGTGGGTGCTGATATAAAGGCTAATGTTGTGGTGGCCAAGGATGGAAGCGGCAAGTATAAGACTGTGGCAGAAGCTGTAGCTTCTGCACCTGACAAAGGAAAAACAAGGTACGTGATCTATGTGAAGAAGGGAACGTACAAAGAGAATGTTGAGATTAGTAGTAAGAAGAAGAACGTCATGCTCGTTGGTGACGGTATGGACGCAACAATAATCACCGGCAGCTTGAACTTTGTTGATGGAACTGGAACCTTCCAATCCGCCACCGTTGCGGCCGTTGGTGATGGATTTATAGGGCAAGACATTTGGTTTCAAAACACGGCGGGGCCAGAGAAGCACCAGGCGGTGGCACTCCGTGTGGGGGCAGACACCTCGGTGATCAACCGGTGCCGCATCGATGCGTACCAGGACACTCTGTACGCCCACAGCAACAGGCAGTTCTACCGTGATTGCGTCATCACCGGCACCATTGACTTCATCTTCGGAAACGCAGCTGTGGTGTTGCAGAACTGCAACCTGGTGGCACGAAAGCCCATGAGTAACCAAAAGAACATGGTGACTGCCCAAGGACGCGAAGACCCAAACCAGAACACAGGCACCTCCATTCAGCAGTGTCAAATAACTGCCAGTTCCGATCTGAAGCCCGTGGTGGGGTCCATCAAGACTTATCTGGGCCGTCCGTGGAAGAAGTACTCGAGAACGGTTGTGATGCAATCTTCAATAGATGGCCATATTGACCCGGCTGGATGGGCTGAATGGGACGATAAGAGTAAAGACTTTTTGGAAACGCTTTATTATGGAGAGTACATGAATAGTGGTGCTGGTGCTGGCACTAGCAAGAGGGTTAAGTGGACTGGTTACCATATCATCACTAGTGCCGCAGAGGCTTCCAAGTTCACCGTGGCACAGCTCATCCAAGGTGATGTTTGGTTGAAGAACACCGGTGTTAACTTCATCACAGGCCTCTAG 1683 0.511 MATQQQQEPLLNNNKPQKSLSRTAWLLILTTIVGVGILASTALIANSYSNLSIIKPSSDLCQHAVNRETCLAHVSEIAPKGQILATTKDQNYNLLQSFLVKSTSAIQEAMATANAVKIRLNATPRQQGALQLCADLMDLSTSRVYDSLVALTNRTTLSLHDAHTWLSTVLTNHATCLDSLDGSARAIMEPQLSDLMSRARTSLAMLVSVLPPPPKGGDEQLNGEFPSWVTRSDRRLLESVGADIKANVVVAKDGSGKYKTVAEAVASAPDKGKTRYVIYVKKGTYKENVEISSKKKNVMLVGDGMDATIITGSLNFVDGTGTFQSATVAAVGDGFIGQDIWFQNTAGPEKHQAVALRVGADTSVINRCRIDAYQDTLYAHSNRQFYRDCVITGTIDFIFGNAAVVLQNCNLVARKPMSNQKNMVTAQGREDPNQNTGTSIQQCQITASSDLKPVVGSIKTYLGRPWKKYSRTVVMQSSIDGHIDPAGWAEWDDKSKDFLETLYYGEYMNSGAGAGTSKRVKWTGYHIITSAAEASKFTVAQLIQGDVWLKNTGVNFITGL 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30810g00003 560 Gene3D - 241 560 IPR012334 -
Stsc30810g00003 560 Pfam Pectinesterase 247 546 IPR000070 GO:0030599|GO:0042545
Stsc30810g00003 560 SUPERFAMILY Pectin lyase-like 244 559 IPR011050 -
Stsc30810g00003 560 SMART PMEI_2 52 205 IPR006501 GO:0004857
Stsc30810g00003 560 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 198 IPR035513 -
Stsc30810g00003 560 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
Stsc30810g00003 560 FunFam Pectinesterase 241 560 - -
Stsc30810g00003 560 NCBIfam pectinesterase inhibitor domain 98 187 IPR006501 GO:0004857
Stsc30810g00003 560 PANTHER PECTINESTERASE 42 550 - -
Stsc30810g00003 560 Pfam Plant invertase/pectin methylesterase inhibitor 59 209 IPR006501 GO:0004857
Stsc30810g00003 560 CDD PMEI-like_4 70 209 - -
Stsc30810g00003 560 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 210 IPR035513 -
Stsc30810g00003 560 ProSitePatterns Pectinesterase signature 1. 272 291 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30810g00003 Stsc-Chr30810 8450 10880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30810g00003 8 556 Carbohydrate Esterase AT1G11580 55.694 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30810g00003 K01051 - gmx:100815836 783.867