Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30807g00002 ATGGGTCGGTGCCGAGCTTCGTCCCGAACTGCGGATGATGATCCAAACCTAAGATCCAAGAAAAAAAAGGCTGCTTCGGATGTAGAGAATTTAGACACTTCATCCCCAGATGTAGTAGCTCAAGGAGTAACTGATGGGAAAGGAGCTTTATACCACTGCAATTATTGCAACAAAGATATTTCAGGGGTGATTCGCATGAAGTGTGCTGTATGTCAAGATTTTGATCTCTGTGTAGAGTGCTTCTCTGTTGGAGCTGAAGTGACACCTCACAAAAGCAATCATCCGTATATGATTATGGATAATCTATCTTTTCCCCTTATAACTCCAGATTGGAATGCAGATGAAGAGATGTTACTTCTAGAGGGCATTGAGATGTATGGATTTGGGAATTGGAATGAAGTTGCTGAGTATGTTGGGACAAAAAGCAAATCTCATTGTATTGACCACTATAATGCTATATATATGAATTCACCATGCTTTCCCCTCCCTGATTTGTCTCTTGTTATGGGAAAAAACAAAGAGGAACTTCTTGAGATGGCAAAGAGATATGAAGTCAAGAAAGAATGTCCAGCAACTGCAGAGCTTACTCTGAAAGAAGAACCTCCCTTGTCTGAGAGAATAAACTCTCAAGAATCTAATAGGGCAGAATTCAGTAATCAAACAGCATCTATGTTAACCTCAGTAGGTGGCAAAACTTACTCAAGTGCAATTAAAAAGGCTTCCAATGTGAGCCAGAATTCTGATGGAGTTAAGGTGGAAGAATATCAATCAGATCGAAGCATTGGAGAGAAGAAACCAAAGTTATCTGGCAAAGTCAAGCCTTCTGTGACTGAGTTGAGTGGATACAGTTTTAAGAGAGAGGAATTTGAAATTGAATATGACAATGATGCAGAACAAGTATTAGCAGATATGGAATTTAAGGACACTGATACTGAGGCTGAACGTGAAATGAAACTGCAGGTGCTCCGTATTTATTCACGAAGATTAGATGAGAGGAAGCGCAGAAAGAATTTTATACTTGAAAGAAATTTACTTTATCCTGATCCATTTGAGAAAACTCTCTCACCTGAGGAGGTTAAAATATGTCAGCGCTACAAGGTCCTCGCACGGTTTCACTCAAAAGAAGAGCATATAGAGTTTCTCAAAAATATTATTGAAGAACACAGGCTTATGAAAAGAATACAGGATTTGCAGGAAGCTCGTGCCGCTGGCTGTCGAACTTCTGCAGAGGTTTACAAATTTATTGAACAGAAGAAAAAAGAAGCCGAACAACGTGTCAGTAGAGAAAATAGTCATGTTGGCATTGGTGCTAAGATGTTGCCAAGGCCGAATCATCTCAAAGGAGAACTTGATAGCAACTCACAGGGTCTTGATAAGGATACTACTGGGGCGAAGTATGTGGCTGCGACCATACAGGATATATCAAGATCTCTAGAAGAATGGGATATTAGTGGATTTACCGGGGCTGAACTACTGTCTGAATCTGAGATAAAGCTTTGTAATGAGATCAGAATACTACCAGCACACTATTTCAAAATGCAGCATGTCTTGTCATTAGAAATTTCAAAGGGCAACGTATCGAATAAATGTGATGCGCATGCATTGTTCAAGGTCGAGCCAAGCAAAGTTGATAGAGTTTATGATATGTTTATACAGAAGGGGATTGTTCCTGCAAATTGA 1680 0.3976 MGRCRASSRTADDDPNLRSKKKKAASDVENLDTSSPDVVAQGVTDGKGALYHCNYCNKDISGVIRMKCAVCQDFDLCVECFSVGAEVTPHKSNHPYMIMDNLSFPLITPDWNADEEMLLLEGIEMYGFGNWNEVAEYVGTKSKSHCIDHYNAIYMNSPCFPLPDLSLVMGKNKEELLEMAKRYEVKKECPATAELTLKEEPPLSERINSQESNRAEFSNQTASMLTSVGGKTYSSAIKKASNVSQNSDGVKVEEYQSDRSIGEKKPKLSGKVKPSVTELSGYSFKREEFEIEYDNDAEQVLADMEFKDTDTEAEREMKLQVLRIYSRRLDERKRRKNFILERNLLYPDPFEKTLSPEEVKICQRYKVLARFHSKEEHIEFLKNIIEEHRLMKRIQDLQEARAAGCRTSAEVYKFIEQKKKEAEQRVSRENSHVGIGAKMLPRPNHLKGELDSNSQGLDKDTTGAKYVAATIQDISRSLEEWDISGFTGAELLSESEIKLCNEIRILPAHYFKMQHVLSLEISKGNVSNKCDAHALFKVEPSKVDRVYDMFIQKGIVPAN 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30807g00002 559 MobiDBLite consensus disorder prediction 249 272 - -
Stsc30807g00002 559 FunFam Transcriptional adapter 2 104 156 - -
Stsc30807g00002 559 Pfam Zinc finger, ZZ type 51 91 IPR000433 GO:0008270
Stsc30807g00002 559 SMART zz_5 47 92 IPR000433 GO:0008270
Stsc30807g00002 559 ProSiteProfiles Zinc finger ZZ-type profile. 48 104 IPR000433 GO:0008270
Stsc30807g00002 559 Gene3D - 472 557 IPR036388 -
Stsc30807g00002 559 ProSiteProfiles Myb-like domain profile. 111 154 IPR001005 -
Stsc30807g00002 559 ProSitePatterns Zinc finger ZZ-type signature. 53 80 IPR000433 GO:0008270
Stsc30807g00002 559 Gene3D - 45 99 IPR043145 -
Stsc30807g00002 559 FunFam Transcriptional adapter 2 473 557 - -
Stsc30807g00002 559 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 51 553 - -
Stsc30807g00002 559 Pfam Myb-like DNA-binding domain 110 151 IPR001005 -
Stsc30807g00002 559 MobiDBLite consensus disorder prediction 1 28 - -
Stsc30807g00002 559 CDD ZZ_ADA2 51 99 IPR041983 -
Stsc30807g00002 559 SUPERFAMILY RING/U-box 51 114 - -
Stsc30807g00002 559 ProSiteProfiles SWIRM domain profile. 472 559 IPR007526 GO:0005515
Stsc30807g00002 559 Gene3D - 104 156 - -
Stsc30807g00002 559 PIRSF Txn_adaptor_ADA2 39 558 IPR016827 GO:0003713|GO:0006357|GO:0035065
Stsc30807g00002 559 SUPERFAMILY Homeodomain-like 103 157 IPR009057 -
Stsc30807g00002 559 SUPERFAMILY Homeodomain-like 476 557 IPR009057 -
Stsc30807g00002 559 ProSiteProfiles SANT domain profile. 106 158 IPR017884 -
Stsc30807g00002 559 FunFam Transcriptional adapter 44 99 - -
Stsc30807g00002 559 CDD SANT 111 151 IPR001005 -
Stsc30807g00002 559 MobiDBLite consensus disorder prediction 252 271 - -
Stsc30807g00002 559 SMART sant 107 156 IPR001005 -
Stsc30807g00002 559 MobiDBLite consensus disorder prediction 1 35 - -
Stsc30807g00002 559 Coils Coil 412 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30807g00002 Stsc-Chr30807 13103 26134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30807g00002 1 555 EF-hand Containing Proteins AT3G07740 53.125 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc30807g00002 Myb_DNA-binding 7.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30807g00002 K11314 - gmx:100779424 795.423