Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30806g00004 ATGGTGGTTGGACAAGCCCCTTCTTCGAACTTGGTCCTCAATTCCAATTACAATTCTAGACAATGGCGCTGGTGGGATTGGTCATCACTCTCTCAAAGGCCTCCGCTGATTTCTCCTTGGCGCACCATCACCGCCACCGCCTCTTCCTCCTCTCAGCAACAAGACACCCCCACAAGTACCGATTCGTCCTCATCCTCAATAACCTCGACTTTCGGAAGACTGAAAGCTCAGAAAGTGAAAGCTCTAGTCCACAGGTCCAAGCAGCACAGAAGCAGAAGCGATGATGAGGATCGACCACGTGATTCATCTCCAAACCCTCGTTCAAGAGGAGGATGGGGGGACGCTGGAGGATCCTTCCGCTCTCTTAATTCTCAGGAGCCCGCTCCCGACACCAACTTCTTCAGTGTCAAGTCCTTCAAGGAACTAGGCTGCGCTGACTACATCATTCAATCCCTCCAAAAGCTCTCTTTCGCGCGCCCTTCGAATGTACAGGCCATGGCATTTGCACCTGTTATTGCTGGAAAGACTTGTATCATAGCTGACCAAAGCGGTTCTGGAAAGACTTTAGCCTATCTTGCACCAATAATTCAGCGTCTTAGGCAAGAAGAACTAGAAGGACACAGTAAATCCTCTCCTCAAGCCCCTAGAGTTATCATACTAGCACCAACAGCTGAATTAGCTTCCCAGGTCTTAGATAATTGTCGATCAATGTCTAGATCCGGGGTTCCTTTCAAATCTATGGTTGTCACAGGTGGCTTTCGACAAAGAACTCAATTGGAAAATTTACAGCAGGGTGTGGACATATTAATAGCTACACCTGGCCGTTTTCTGTTCCTTATGAAGGAAGGCTTCTTGCAGTTAACCAACCTAAGATGTGCTGTGTTGGATGAAGTAGATATTCTCTTTGGTGATGAGGATTTCGAAGTGGCTCTTCAATGCTTGATCAATTCATCACCTGTAGCTACACAATACTTATTTGTGACTGCAACTCTACCAAGAGATGTTTACAGCAAACTGGTTGAACTTTTCCCGGATTGTGAGATGATCATGGGACCTAGTATGCACCGAATAAGCCCACGCCTTGAAGAGATCATAGTAGATTGCAGTGGAGAAGATGGGCAAGAAAAAACTCCTGATACAGCATTTTTGAACAAGAAATCTGCTCTTCTGCTGCTTGCAGAGGAACGCCCTGTTCCAAGAACTATTGTGTTCTGCAACAAAATTGATACGTGCCGAAAAGTCGAAAATGCATTGAAGCGCATAGATAGAAAGGGAGCACTTATACAAGTCCTACCTTTCCATGCTGCCATGACACAAGAATCAAGGCTTGCTAGTATGAAGGAGTTTGCACGTTCACCGTCAAAACAAATGTCCCAGTTTATGGTTTGCACTGACCGAGCATCAAGGGGAATAGACTTTTGGGGAGTGGAGCACGTGATACTGTTTGACTTCCCGAGGGATCCAAGCGAATATGTGAGGCGTGTCGGAAGAACAGCGAGAGGTGCCAAGGGAGCGGGGAAGGCATTCATATTTGTGGTGGGGAAGCAGGTATCACTTGCGCGCAAAATCATGGAAAGAAATCGAAAAGGTCACCCGCTACATGATGTCCCTTCTGCTGCTACCTTCTAA 1629 0.4684 MVVGQAPSSNLVLNSNYNSRQWRWWDWSSLSQRPPLISPWRTITATASSSSQQQDTPTSTDSSSSSITSTFGRLKAQKVKALVHRSKQHRSRSDDEDRPRDSSPNPRSRGGWGDAGGSFRSLNSQEPAPDTNFFSVKSFKELGCADYIIQSLQKLSFARPSNVQAMAFAPVIAGKTCIIADQSGSGKTLAYLAPIIQRLRQEELEGHSKSSPQAPRVIILAPTAELASQVLDNCRSMSRSGVPFKSMVVTGGFRQRTQLENLQQGVDILIATPGRFLFLMKEGFLQLTNLRCAVLDEVDILFGDEDFEVALQCLINSSPVATQYLFVTATLPRDVYSKLVELFPDCEMIMGPSMHRISPRLEEIIVDCSGEDGQEKTPDTAFLNKKSALLLLAEERPVPRTIVFCNKIDTCRKVENALKRIDRKGALIQVLPFHAAMTQESRLASMKEFARSPSKQMSQFMVCTDRASRGIDFWGVEHVILFDFPRDPSEYVRRVGRTARGAKGAGKAFIFVVGKQVSLARKIMERNRKGHPLHDVPSAATF 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30806g00004 542 SMART ultradead3 156 364 IPR014001 -
Stsc30806g00004 542 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 50 538 - -
Stsc30806g00004 542 Gene3D - 119 349 IPR027417 -
Stsc30806g00004 542 SMART helicmild6 412 502 IPR001650 -
Stsc30806g00004 542 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 385 542 IPR001650 -
Stsc30806g00004 542 Pfam DEAD/DEAH box helicase 162 335 IPR011545 GO:0003676|GO:0005524
Stsc30806g00004 542 Gene3D - 361 535 IPR027417 -
Stsc30806g00004 542 CDD DEADc 148 343 - -
Stsc30806g00004 542 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 168 349 IPR014001 -
Stsc30806g00004 542 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 137 165 IPR014014 GO:0003724
Stsc30806g00004 542 Pfam Helicase conserved C-terminal domain 390 501 IPR001650 -
Stsc30806g00004 542 MobiDBLite consensus disorder prediction 44 73 - -
Stsc30806g00004 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 513 IPR027417 -
Stsc30806g00004 542 CDD SF2_C_DEAD 361 512 - -
Stsc30806g00004 542 MobiDBLite consensus disorder prediction 88 104 - -
Stsc30806g00004 542 MobiDBLite consensus disorder prediction 44 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30806g00004 Stsc-Chr30806 7864 11273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30806g00004 137 510 Eukaryotic Initiation Factors Gene Family AT3G13920 26.913 3.67e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30806g00004 K13179 - gmx:100780849 702.205