Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30805g00004 ATGGCATCATCACTGGAGGAGCTACTTGCCAAGGAAGGGTTCAAAGGAATCACAAGATCAGTGGCGAGGACTAGATCATCCTTTCACCATGGTGCTTTGACTGAGCCACTTTTCTCTCCGGACGAGCCAAGGAGACTCTCTGTATCGACTGATGGAATTACAAGGCACAGAACAAAGTCTGACTCCTCGCCCTTTCACTTTCAGAGTCGAAGCGGACTATCAAAGAGCGATAGTGCTAATAGCAGGAGGCCAAGGGATAAGCTCTTTCTGAGAGACAGAAATTCAGGCAAAGAAGAGGATTTGGATCAGGTTGTGGAAAAGCAAATGCCTGCCACGTACACAAGACCAACTAGCAACAACAAAAAGAATCAAGATCGCTACATTCAATCGCCTTCTAATTTTGCTCTTGATGAAGTTGTTGTCCGAGCAGTAGTTTCCATTCTGAATGGATACATCAAACGTTTTCTAAGAGATGAGGACTTCAGGGCTACGCTGCGTCACAATTGTTTCTCCTCTTTGAACTTCATTGAGCTGAGAGAAGAGAACAATACCGAGACCAAAATCATAACAAGCCTTGAACAAGCAATCGAGACCATTGAGCAAACTGCAGAGCAGTCTGCACCTTCCACACATATGAAAAGAGCCACAATGCAGCTAAGCATCATCACAGGCCTGAGTTTAAATGATTTGAAGCACGGTTTTACATGCGGGATCCCAAATTATAAATTGTCAGCCTGTGCTCATCTTTATCTCAGTGTGGTATATGTGACACAGGGAAAAAGCAAGGTGTCTGCAAAGCATCTATTGCAAGTGTTCTATGATTCGCCTTATCAGGCGCGATCAATATTGTTGCCTGAACTCTGGGAGCAACTATTTGCTCCACAACTTACCCACTTCAGGACATGGTACAACAAGGAAGCTGAGATTTTAGCAAATACACCAAACCGAACAAGGAAGATGAAGCTTCTTCAAGAAGTGTATAATGAGCATTTGGATTCCGGTACTCGTATATTTGCTGTATACTACAAAGATTGGCTCACTGAAGGAGTTGAGTCTCCAGCTATTCCTTCCATTAGCGTTCCATCAATATCATTTGGTCATTCTTCAGAGTCTGCTACCTCCACCGAGCCGTTCTCTCCCCAGCCAATGGTCAGCAAGAAACTATACGATTCTGTCTTTAGTAGCTCCAGCAAAACCAAAGTTTATGATGCTGAAGATAAGATACCAGTGTTTGTCCCAGGCTCTTATAGTTCTACTATTGTTAAACAAACATTGACATATGAGTCTGAAACAACTAAATTTACAGATCAGGATATTGAAGATTTCGCTCTAAGTTTACCAATTGAATCACTCAGTGAGAAAGGAGCTCCATTTACAACTGTAGAAGAATCTAAGGAATGTGATCTCAGCAATAACATTGACAACCCCTTCTCCACACAAACTAATTTAGACAGCTACATAGTAGATGCTCTACCATTTGGCAAGGAAGATGAACTTACACTCATAAAGCCAAACAAGATAAGGTCTGATCTTGCAGCATCATGTTCTCCAAACATTCCACCAGAATTTATTTGTCCTCTTACGGGAACTGTCTTTGAGGAACCAGTCACCCTGGAGACTGGTCAAACCTATGAAAGAGAAGCCATCAAGGCGTGGTTTGAGAAGGGAAACAGAACATGCCCGGTAACTGGAAATACTCTAGAATATGTGGCTATGCCGCTTACCAACCTTATTTTGAAGCGTTTGATCGATAACTGGAAGTCCGAAAGCTTCAATCATCTTCTAAATATTGCTTCTAAAACAGTGGGAAACTCAAAGGAACTTAGTTCCAGAAATGAAGATGAAGTTGCTGTTTTCAAGTTAGAGAGTTTTCTGTCTTCTTTCAATGAAGAGGAGAAAACAACTTATGCCAAGTATCTCATCTCGTTAGGAGTTGTATCATTTCTTTTTAGGAGGTTTGAACTGGGAAATGTGGAGGAAAAATCAAGTGTGGTTTCACTCTTGTTAATTTGTATTGTAGCAGACTCTAGCTGCATATATCGGATAGCAGAAAATGTTAACAGAAAATGTCTTCTTGAGCTTCTTCACAGCAAGGAGGTTACTCCGTTAACAAATGCAATATTATTGCTTACTGAACTTTCATCCATGAGGAGGAGAAAGGATGTTACATCATTCATTAGCGACTTGGTGGGTGAAGATGTTTTTAAAACATTGCGCATTCTACTCAAGTATCTTAACAAATCTAGTTCACATGAAAAGCCCCTAACCGCCGTTCTGTTGCTACACTTTGATCTACTGGTTGAGCCTCAAAAGTTTAGCATATACAGAGAGGTGGCAGTGAATGTCATTGCAACGGCACTTGATGCCAGCTTAAATGATGAGAAGACCCGAGTGGAGTGTTGCAGAGCACTCCTAGTTTTGTGTGGACACTTTTCCTCTAATGGGAGGATACTGATCAAGTCTAGTACCTTCCAAGAAGCAGACTACAATATCAACACATCGGAAGTAAGACTTCAAGGCAGTGAAGAAGAGGGTCTACTGTGGGATCAAGCAACCACTTTGTCTGAAGATGAAGAAGCAATGGGAGAAGAGTTGCTGACGAACTTGTTAGAATCACTAGTTGGAGATGGAGATAGCCCATTTTTGAACAACTTATGTGGATGCCTAGATTCTAGACACCTAGATTTGACTCTTGCATCAGTGTCCTTGCTTAATTTCAGTAAGATATCAGAATGCAGAACTCTGTTGAAGACAATGGCAGAAGACATTGCTCCCCTTCTTCATAGGCTTGTTGATGTAACATGGACTGCTAAGCAGCTGCATGCCATTGTGTCTGGGGAAAATCTGTAG 2850 0.4172 MASSLEELLAKEGFKGITRSVARTRSSFHHGALTEPLFSPDEPRRLSVSTDGITRHRTKSDSSPFHFQSRSGLSKSDSANSRRPRDKLFLRDRNSGKEEDLDQVVEKQMPATYTRPTSNNKKNQDRYIQSPSNFALDEVVVRAVVSILNGYIKRFLRDEDFRATLRHNCFSSLNFIELREENNTETKIITSLEQAIETIEQTAEQSAPSTHMKRATMQLSIITGLSLNDLKHGFTCGIPNYKLSACAHLYLSVVYVTQGKSKVSAKHLLQVFYDSPYQARSILLPELWEQLFAPQLTHFRTWYNKEAEILANTPNRTRKMKLLQEVYNEHLDSGTRIFAVYYKDWLTEGVESPAIPSISVPSISFGHSSESATSTEPFSPQPMVSKKLYDSVFSSSSKTKVYDAEDKIPVFVPGSYSSTIVKQTLTYESETTKFTDQDIEDFALSLPIESLSEKGAPFTTVEESKECDLSNNIDNPFSTQTNLDSYIVDALPFGKEDELTLIKPNKIRSDLAASCSPNIPPEFICPLTGTVFEEPVTLETGQTYEREAIKAWFEKGNRTCPVTGNTLEYVAMPLTNLILKRLIDNWKSESFNHLLNIASKTVGNSKELSSRNEDEVAVFKLESFLSSFNEEEKTTYAKYLISLGVVSFLFRRFELGNVEEKSSVVSLLLICIVADSSCIYRIAENVNRKCLLELLHSKEVTPLTNAILLLTELSSMRRRKDVTSFISDLVGEDVFKTLRILLKYLNKSSSHEKPLTAVLLLHFDLLVEPQKFSIYREVAVNVIATALDASLNDEKTRVECCRALLVLCGHFSSNGRILIKSSTFQEADYNINTSEVRLQGSEEEGLLWDQATTLSEDEEAMGEELLTNLLESLVGDGDSPFLNNLCGCLDSRHLDLTLASVSLLNFSKISECRTLLKTMAEDIAPLLHRLVDVTWTAKQLHAIVSGENL 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30805g00004 949 ProSiteProfiles U-box domain profile. 518 593 IPR003613 GO:0004842|GO:0016567
Stsc30805g00004 949 SUPERFAMILY RING/U-box 516 590 - -
Stsc30805g00004 949 MobiDBLite consensus disorder prediction 110 126 - -
Stsc30805g00004 949 MobiDBLite consensus disorder prediction 48 63 - -
Stsc30805g00004 949 Pfam U-box domain 519 589 IPR003613 GO:0004842|GO:0016567
Stsc30805g00004 949 SUPERFAMILY ARM repeat 618 904 IPR016024 -
Stsc30805g00004 949 CDD RING-Ubox_PUB 520 568 IPR045210 -
Stsc30805g00004 949 MobiDBLite consensus disorder prediction 79 105 - -
Stsc30805g00004 949 PANTHER OS04G0584500 PROTEIN 898 947 - -
Stsc30805g00004 949 SMART Ubox_2 522 586 IPR003613 GO:0004842|GO:0016567
Stsc30805g00004 949 MobiDBLite consensus disorder prediction 33 126 - -
Stsc30805g00004 949 MobiDBLite consensus disorder prediction 64 78 - -
Stsc30805g00004 949 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 518 593 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30805g00004 Stsc-Chr30805 25475 29575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30805g00004 507 633 U-box Gene Family AT5G42340 37.008 1.26e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30805g00004 - - gmx:100820501 1125.54