Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30805g00002 ATGTCAGCATCGTCAGGGTCAGAATTTGGATCTGCTTTTACGACACCCAGATTGGTCCTCAAGAAGGTTCTGGCCAAGTCTCAACGCGAAGGCGACGGGGCTATTGTCAGAAGAGGCATTGGAAGAAGCGAGTTGAAGAACTTGGATCCATTTTTGATGTTGGACCACTTCTCAGTATCAGCCCCTGGAGGATTCCCCGATCATCCCCACAGAGGTTTTGAGACAGTTACCTACGTCCTAGAGGTATATATTACTTTAATTTCCCTCCCTCCCTCGGGAATCATTCACTCCGAGATGCCTGCCCAACCAACCAACAACAACGGCTTGCAGCTATGGATCAACTTATCCGCCAACAACAAGATGATTGAACCCAAGTACCAAGAACTTCTCAGCGAGAACATACCGTCGGCAGAGCATGAAGGGGTGGAGGTGAGAGTGATAGCAGGAGAAGCAATGGGTGTGCATTCCCCGGTCTACACTCGAACTCCAACCATGTTTCTTGATTTCACGCTACATCCCGGTGCTCAGTTGCATCAGAGCATTCCGGAGTCATGGAACTCCTTTGTTTATGTCATTGAAGGTGAGGGGGTGTTCGGCTCTCCAACTTCATCCCCAACTGGTCCATACCATGTGCTGGTTCTGACCCAAGGGGATGGCCTCAGCGTCTGGAACAACAACTCCTCTTCAAAGCCTCTCAGGTTTGTGCTCATTGGAGGCCAGCCACTGAACGAGCCCGTGGCTCAGTATGGCCCTTTTGTCATGAATACACAGTCCGAGATCGAGAAGACCATTGAGGACTATCAGTATTGCAGGAATGGCTTTGAGATGAGGAGGTATTGGACCTCTATCTAG 852 0.5 MSASSGSEFGSAFTTPRLVLKKVLAKSQREGDGAIVRRGIGRSELKNLDPFLMLDHFSVSAPGGFPDHPHRGFETVTYVLEVYITLISLPPSGIIHSEMPAQPTNNNGLQLWINLSANNKMIEPKYQELLSENIPSAEHEGVEVRVIAGEAMGVHSPVYTRTPTMFLDFTLHPGAQLHQSIPESWNSFVYVIEGEGVFGSPTSSPTGPYHVLVLTQGDGLSVWNNNSSSKPLRFVLIGGQPLNEPVAQYGPFVMNTQSEIEKTIEDYQYCRNGFEMRRYWTSI 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30805g00002 283 CDD cupin_pirin_C 163 241 - -
Stsc30805g00002 283 Pfam Pirin C-terminal cupin domain 166 273 IPR008778 -
Stsc30805g00002 283 Pfam Pirin 37 81 IPR003829 -
Stsc30805g00002 283 Gene3D Jelly Rolls 26 85 IPR014710 -
Stsc30805g00002 283 PANTHER PIRIN-RELATED 92 282 IPR012093 -
Stsc30805g00002 283 Gene3D Jelly Rolls 125 242 IPR014710 -
Stsc30805g00002 283 Gene3D Jelly Rolls 91 124 IPR014710 -
Stsc30805g00002 283 PIRSF Pirin 15 85 IPR012093 -
Stsc30805g00002 283 PIRSF Pirin 91 281 IPR012093 -
Stsc30805g00002 283 SUPERFAMILY RmlC-like cupins 17 281 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30805g00002 Stsc-Chr30805 6917 8649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30805g00002 14 278 Calmodulin-binding Proteins AT3G59220 56.690 2.03e-109 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30805g00002 K06911 - gmx:100775597 438.343