Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30802g00006 ATGAATCAGAATAATAATCATCAAAGGGACCGCCGTGTGCTATCACTACCGGCGGTGCACCCTTGCGAAGGGATATCTCCGGCCACCCTCATCTCCTCCCTTGTTACCCTCTCCCAGAACATATGCAACTACCAACACACCTTCTTCGCAACACAGAGACGAAACGCAAGAGAAGCAATCCGCCAAGTCAGCATCATCCTCCTCTTCCTTCTCGAAATTCAAGAACGAAGCTCACCAATCCCTCAATCCACCGTCCTCAGCCTCTCGGAACTTCACTTCACGTTCCAGAAGATTCATTTCCTGCTGCAAGATTGCGCGCAGGAAGGCGCGCGCCTCTTGCTTCTCGCCAACTCCAACCACGTGGCTTCCCTCTTTCGAACCCTGGTTCGCGCGGTGGCGACTTCTCTCGACGTTCTTCCACTCCACGAAATCGAGGTGTCCGGCGAGGTGAGGGAGCTGGTGGAGCTAGTGGCGAAGCAAGCGAGGAAAGCAAAAATGGAGCACGAGGCTAAAGACGAAGGCGCCAGTAAGAGAGTACATTCAATTCTAAAACAATTAGAAAAGGGAATCGAGCCAGATAAGAATGCATTGAAAGAGATCATGGAATACCTAGAAATCAAGACTTGGAACGAGTGTAACAGAGAGATAAACTTTCTAGAAGAAGAAATCGCTTTGGAATGCAGTCACTCCAACGAACGAGAACGAGAGTCTCCTCTACTGAGTGGCTTGTTAGGGTTCATGAGCTACTGCAGGGTAGTTATCTTCGAAACAGTAGATATTAACAATAATATAGAAAAATCAGAAACGAGACTAAGCACGGAAATGATAACGACCGTTAATCCAGAGGACTTCCGGTGCCCAATATCTCTGGAGATGATGACGGATCCCGTGACGGTTTCAACAGGACAAACGTACGACAGAGCTTCCATCAAGAAATGGCTGAAAGCAGGGAACACCGTATGCCCTAAAACAGGGGAGAATCTCTCAAACACGGAGCTCGTCCCAAACAGAACGCTCAAGAGACTCATCCAACAGTTCTGCAATGACAACGGCATTTCCCTCTCAAAATCAACCAACCGTAACCGCGACTTAGCCAGAACAATATTCCCAGCCAGTGCGGCCAACGCTCACGCCATGCAGTTCCTCTCATGGCACCTCGCGCGGATGCTCGCCTTCGGTACGGACAAACAGAAATCCAAAGCCGCTTACGAGATTCGGTTACTCGCAAGGTCCAACTTGTTCAACAGAGCCTGCTTGATCCAAGTTGGAACCATTCCGCCTCTGCTCGATCTTCTTCTCTCCACGGACGAGAAAGAAAAATCCACGCAGGAAAACGCAATTTCCGCGTTGATGAAGCTCTCTAAGCATGCCAGTGGGCCCCAGCACGTCATGGATTGTAACGGTCTGAAACCGATTCTAACGATTTTAAAGAAAGGGCTGAGCCTGGAAGCGCGTCAAGTTGCGGCAGCTACTATTTTCTACCTCGCGTCAGTGAGAGAGTATAGGAAGGTGATAGGGGAAAACCCTGAGGTGGTTCCTTCTCTGGTGGAGTTGGTGAATGAAGGAACCACGTGCGGGAAGAGGAATGCGGTGGTTGCTATTTACGGTTTGGTGGTTGTTCCAAGGAACCAGAAACGAGCAATCGAAGCGGGTGTGGTTCACGCGCTTGTTGGCGTGTTGGGATCGTCCGAGAAGGAGGAGCTTGTAACAGAATGTTTGGCGGTTTTGGCTGTTTTGGCTGAGAATGCGGAAGGAGCTAACGCGATTTGGCGCGCGTCGGCTCTACCGTTGGTTACTGGGATGCTCCAAACGGCGTCGTCGCGCGTGGGGAAAGAACACTGTGCTTCGATTTTGCTTTCGCTGTGTGTTAACATTGGTGCGGAGGTTGTGGCGGTTTTGGCGAAGGACACTTCGGTGATGCCTCTGCTTTACTCGCTTGTGACGGAAGGTACCTCCCACGCGGCGAAGAAAGCAAGGTTCCTCATAAAAGTTCTGCAGGATTTCAGTGAAAGCAGAGCTTTGGGATTCAAGGGTTCCTCTGTTCCGCAGGAACCATCGCTTCGTGTTTGGTGA 2073 0.5055 MNQNNNHQRDRRVLSLPAVHPCEGISPATLISSLVTLSQNICNYQHTFFATQRRNAREAIRQVSIILLFLLEIQERSSPIPQSTVLSLSELHFTFQKIHFLLQDCAQEGARLLLLANSNHVASLFRTLVRAVATSLDVLPLHEIEVSGEVRELVELVAKQARKAKMEHEAKDEGASKRVHSILKQLEKGIEPDKNALKEIMEYLEIKTWNECNREINFLEEEIALECSHSNERERESPLLSGLLGFMSYCRVVIFETVDINNNIEKSETRLSTEMITTVNPEDFRCPISLEMMTDPVTVSTGQTYDRASIKKWLKAGNTVCPKTGENLSNTELVPNRTLKRLIQQFCNDNGISLSKSTNRNRDLARTIFPASAANAHAMQFLSWHLARMLAFGTDKQKSKAAYEIRLLARSNLFNRACLIQVGTIPPLLDLLLSTDEKEKSTQENAISALMKLSKHASGPQHVMDCNGLKPILTILKKGLSLEARQVAAATIFYLASVREYRKVIGENPEVVPSLVELVNEGTTCGKRNAVVAIYGLVVVPRNQKRAIEAGVVHALVGVLGSSEKEELVTECLAVLAVLAENAEGANAIWRASALPLVTGMLQTASSRVGKEHCASILLSLCVNIGAEVVAVLAKDTSVMPLLYSLVTEGTSHAAKKARFLIKVLQDFSESRALGFKGSSVPQEPSLRVW 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30802g00006 690 SMART arm_5 456 497 IPR000225 GO:0005515
Stsc30802g00006 690 SMART arm_5 540 581 IPR000225 GO:0005515
Stsc30802g00006 690 SMART arm_5 411 455 IPR000225 GO:0005515
Stsc30802g00006 690 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Stsc30802g00006 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 468 IPR000225 GO:0005515
Stsc30802g00006 690 FunFam RING-type E3 ubiquitin transferase 279 354 - -
Stsc30802g00006 690 FunFam RING-type E3 ubiquitin transferase 360 676 - -
Stsc30802g00006 690 Gene3D - 371 674 IPR011989 -
Stsc30802g00006 690 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Stsc30802g00006 690 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Stsc30802g00006 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 354 IPR013083 -
Stsc30802g00006 690 PANTHER U BOX DOMAIN-CONTAINING 59 665 - -
Stsc30802g00006 690 SUPERFAMILY RING/U-box 277 353 - -
Stsc30802g00006 690 SUPERFAMILY ARM repeat 388 665 IPR016024 -
Stsc30802g00006 690 CDD RING-Ubox_PUB 281 333 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30802g00006 Stsc-Chr30802 26461 28840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30802g00006 11 687 U-box Gene Family AT1G60190 37.645 3.26e-157 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30802g00006 - - tpra:123884536 876.7