Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30802g00005 ATGAAAGAGGGAAGTGAGGGTTTCGTGAGGGCCGATCAGATTGATCTGAAGAGCATAGATGAGCAGCTCGAGAGGCATCTCAACAAGGTCATCACCATGGACAAGAAGAAGAACAACCTCGACGACGATCACCACCACCACCTACTTCCTCAGATTCACACAACCACCAGCGCTTCTGCTTCACCCAAATTCAAGTCCCCTGTTAGCAGCCCCTTCAAGAAGCAGCAGAGGCACGATTGGGAGATTGACCCTTCCAAACTCATCATCAAGTCCGTTATAGCTCGTGGCACTTTCGGCACTGTTCATCGTGCTCTCTATGATTCTCTAGATGTTGCTGTTAAATTGCTGGATTGGGGCGAAGAAGGGCAACGGACGGAAGCTGAAGTTAATTCTTTGAGGTCAGCCTTTATACAGGAAGTTGCTGTTTGGCACAAACTTGATCATCCCAATGTCACAAAGTTTATAGGCGCAACTATGGGGTCTTCAGAACTACAGATACAAACCGAGACTGGTGTAATTAGCATGCCAAGCAATATCTGTTGTGTTGTTGTTGAGCTGAGTTACCTTCACTCACAGAAGATTGTCCATAGAGATGTAAAGACAGAAAACATGCTGTTGGATAAGACCCGTACAGTTAAAATTGCCGATTTTGGGGTTGCACGAGTGGAGGCATCAAATCCTAATGATATGACTGGAGAGACTGGCACTCTTGGTTACATGGCTCCAGAGGTTTTAAATGGCAACCCCTATAACCGGAAGTGTGATGTGTACAGTTTTGGAATCTGCTTGTGGGAGATTTATTGTTGTGACATGCCATACCCTGACCTAAGTTTTTCAGAGATTACTTCGGCCGTCGTTCGCCAGAATCTGAGACCAGAAATACCAAGATGTTGCCCAAACTCTCTAGCAAATGTGATGAGGAAATGCTGGGATGCAAGTCCTGATAAGCGGCCAGAGATGGACGAGGTGGTCTCGATGTTGGAGGCCATCGACACATCCAAAGGCGGAGGCATGATCCCCATTGATCAGCAACAGGGTTGTCTTTGCTTCCGCAAGTACAGAGGTCCTTGA 1071 0.4697 MKEGSEGFVRADQIDLKSIDEQLERHLNKVITMDKKKNNLDDDHHHHLLPQIHTTTSASASPKFKSPVSSPFKKQQRHDWEIDPSKLIIKSVIARGTFGTVHRALYDSLDVAVKLLDWGEEGQRTEAEVNSLRSAFIQEVAVWHKLDHPNVTKFIGATMGSSELQIQTETGVISMPSNICCVVVELSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEITSAVVRQNLRPEIPRCCPNSLANVMRKCWDASPDKRPEMDEVVSMLEAIDTSKGGGMIPIDQQQGCLCFRKYRGP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30802g00005 356 PRINTS Tyrosine kinase catalytic domain signature 188 206 IPR001245 GO:0004672|GO:0006468
Stsc30802g00005 356 PRINTS Tyrosine kinase catalytic domain signature 298 320 IPR001245 GO:0004672|GO:0006468
Stsc30802g00005 356 PRINTS Tyrosine kinase catalytic domain signature 254 276 IPR001245 GO:0004672|GO:0006468
Stsc30802g00005 356 FunFam Kinase suppressor of Ras 1 76 171 - -
Stsc30802g00005 356 SUPERFAMILY Protein kinase-like (PK-like) 59 327 IPR011009 -
Stsc30802g00005 356 ProSiteProfiles Protein kinase domain profile. 87 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30802g00005 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Stsc30802g00005 356 SMART serkin_6 87 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30802g00005 356 CDD STKc_MAP3K-like 93 327 - -
Stsc30802g00005 356 Gene3D Transferase(Phosphotransferase) domain 1 177 345 - -
Stsc30802g00005 356 MobiDBLite consensus disorder prediction 54 76 - -
Stsc30802g00005 356 MobiDBLite consensus disorder prediction 54 71 - -
Stsc30802g00005 356 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 71 330 - -
Stsc30802g00005 356 Pfam Protein tyrosine and serine/threonine kinase 89 169 IPR001245 GO:0004672|GO:0006468
Stsc30802g00005 356 Pfam Protein tyrosine and serine/threonine kinase 186 327 IPR001245 GO:0004672|GO:0006468
Stsc30802g00005 356 Gene3D Phosphorylase Kinase; domain 1 75 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30802g00005 Stsc-Chr30802 18793 22570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30802g00005 1 288 MAP Kinase Kinase Kinase AT5G50000 68.944 1.58e-160 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Stsc30802g00005 PK_Tyr_Ser-Thr 1.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30802g00005 - - gmx:100807921 582.408