Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30802g00002 ATGGGGCTTTTTTATCAGTGGTTGACACGAAGACAAGCACACTTATTGCTAGCACAACAGGGTATACCAGTATCTGAATATGGGGGTGAGCTTTACCTTATTGTATCTTGTGACAGTAGAGAAGCAGTTGAAGCTTTAATTCAAGAACTCCCAAAGTTCACGTTGAAGGCAGTCCCCACTGACTGCAGCGAATGCCCAATCTGCTTGGAAGAGTTCTACCTTGGGAATGGGGTTAGAGGCCTGTCTTGTGCTCATAATTTTCATGTTGCATGCATTGATGAGTGGCTGAGGCTGAATGTGAAATGTCCTCGGTGCCGTTGCTCCGTGTTTCCAAATCTTGATCTTAGTGCTCTGTCCAATCTCCGTCCTGAATCTGAACGATCTTTGGCTAGGGTTGTGACAACTACCAGATATGTGAGAGGCCAACCTTCTAGTCAAAGTTATCGACTAAGATTACATGGCCTCCCCTGTCCAGTTCGGGCTGAGATTGCTGGGCCAGTTGCTGCCATAGACAATGCTTTGGAAAATGCTTATAACGGCATTGTGTCCAATGTAGAGATTCAAAATGCCATGAGTGGAAATCAGCCAGGGATGGATGGCAGGGCTCACTGTTACAGTGAATCAGTGTTCATTGAGGCATAA 642 0.4595 MGLFYQWLTRRQAHLLLAQQGIPVSEYGGELYLIVSCDSREAVEALIQELPKFTLKAVPTDCSECPICLEEFYLGNGVRGLSCAHNFHVACIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPESERSLARVVTTTRYVRGQPSSQSYRLRLHGLPCPVRAEIAGPVAAIDNALENAYNGIVSNVEIQNAMSGNQPGMDGRAHCYSESVFIEA 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30802g00002 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 111 IPR013083 -
Stsc30802g00002 213 Pfam Ring finger domain 64 106 IPR001841 -
Stsc30802g00002 213 SUPERFAMILY RING/U-box 46 114 - -
Stsc30802g00002 213 SMART ring_2 65 105 IPR001841 -
Stsc30802g00002 213 ProSiteProfiles Zinc finger RING-type profile. 65 106 IPR001841 -
Stsc30802g00002 213 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 35 186 IPR044793 GO:0004842|GO:0010182
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30802g00002 Stsc-Chr30802 4840 7902 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30802g00002 6 185 C3H Transcription Factor Family AT3G47990 54.245 1.37e-65 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30802g00002 K16284 - gmx:100812016 281.952