Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30801g00003 ATGGCAGCAGCTATAGATATACACAATAACATGATGACACAAGATTATTTATCATACTCTTGTAGTGATGAAGAGTTGATGAAAGCACTTGAACCTTTTATTATGTCAAGTGATTATTTTTCATCCAACTCTAATAATAATAACAATAATAATTCATTACCCTGTTTTTCTCTCTCACCTTCTTCCCCTGCCTCATCATCACACCCTTCTTATTACAATTCCTTCCTCTCTAATTATACCCCTTCACCCTTAAATTCTACCACCCAAAGTTCCATAAGACTCAACCAACTCACACCATCTCAAATTCTCCAAATCCAATCACAAATTCATGTTCCACAACAACAAAAGAATCAACAAGCCTTGTCCCTTGCTCCAAAGCCTGTCCCCATGAAGAACGCCGGCACAACGAATTCCTCTTCTGCCGCGAAGCCTACGAAGCTCTACCGAGGGGTGAGGCAAAGGCATTGGGGAAAATGGGTCGCAGAGATAAGGCTACCAAAGAACCGAACCCGTCTTTGGCTTGGAACATTCGACACGGCTGAAGAAGCAGCATTGGCTTATGACAATGCTGCTTTTAAGCTAAGGGGCGAACTTGCACGGCTTAATTTCCCTCATCTTCGTCATCATGGAGCACATGTGTATGGCGAATTCGGGGAAATCAAGCCGTTACCCTCTTCGGTGGACGCGAAACTCCAAGCCATTTGTGAAAGCATGGAGAAAACAGAGAAGGTTATAGTGGATACAAAACCTAAAATAGAGGAAAATAATGCAACGAAATCCAACGTTGGATTTGGTTGTGCTGAGTTTGAGGATCATAAGTTTGAGAAGAAGCCAATGTTGTCTCCTCCTATGTCCGATGAATTGTCCACCGGCGGCGGTGTTTCTTCGCCGGAATCCGATATCACCTTCTTGGATTTCTCGGATCCAGATGAAATTGACAACCTTGGATTGGATTTGAAGAAGTATCCTTCAGTTGAGATTGATTGGGCGTCTATATGA 999 0.4284 MAAAIDIHNNMMTQDYLSYSCSDEELMKALEPFIMSSDYFSSNSNNNNNNNSLPCFSLSPSSPASSSHPSYYNSFLSNYTPSPLNSTTQSSIRLNQLTPSQILQIQSQIHVPQQQKNQQALSLAPKPVPMKNAGTTNSSSAAKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAFKLRGELARLNFPHLRHHGAHVYGEFGEIKPLPSSVDAKLQAICESMEKTEKVIVDTKPKIEENNATKSNVGFGCAEFEDHKFEKKPMLSPPMSDELSTGGGVSSPESDITFLDFSDPDEIDNLGLDLKKYPSVEIDWASI 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30801g00003 332 Gene3D AP2/ERF domain 147 205 IPR036955 GO:0003700|GO:0006355
Stsc30801g00003 332 PRINTS Ethylene responsive element binding protein signature 170 186 IPR001471 GO:0003700|GO:0006355
Stsc30801g00003 332 PRINTS Ethylene responsive element binding protein signature 148 159 IPR001471 GO:0003700|GO:0006355
Stsc30801g00003 332 MobiDBLite consensus disorder prediction 277 305 - -
Stsc30801g00003 332 MobiDBLite consensus disorder prediction 288 302 - -
Stsc30801g00003 332 Pfam AP2 domain 148 197 IPR001471 GO:0003700|GO:0006355
Stsc30801g00003 332 ProSiteProfiles AP2/ERF domain profile. 147 204 IPR001471 GO:0003700|GO:0006355
Stsc30801g00003 332 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 332 - -
Stsc30801g00003 332 MobiDBLite consensus disorder prediction 114 142 - -
Stsc30801g00003 332 SMART rav1_2 147 210 IPR001471 GO:0003700|GO:0006355
Stsc30801g00003 332 FunFam Ethylene-responsive transcription factor 2 146 205 - -
Stsc30801g00003 332 SUPERFAMILY DNA-binding domain 147 205 IPR016177 GO:0003677
Stsc30801g00003 332 CDD AP2 146 206 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30801g00003 Stsc-Chr30801 20891 22402 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30801g00003 1 332 AP2-EREBP Transcription Factor Family AT1G78080 48.725 1.40e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc30801g00003 AP2 3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30801g00003 K09286 - gmx:100815162 308.531