Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30798g00004 ATGGCACTCTCACTTTTGTTTCCTCTAGTTACCACCTTGCTTCTCATGCAAACTCTGGCAGATACTTCATGCACCGATTGTTTTGTTCAATCTCGGGCATCATATTACCCAAACTCTGAAGTAAATGGCACAGATGCTGGTGCATGCGGATTTGGTTCCTTTGGTGCTACAATTAATGGTGGCGATGTATCAGCTGCGTCCAATCTTTACCGAAATGGTGTTGGCTGTGGCTCCTGTTACCAGGTAAGGTGCACAAACAATACCTATTGCTCAGACAATGGCGTCACCGTAGTTATAACTGACCAAGGCTCAGGCGATGACACTGACTTCATTCTGAGTCAACGAGCCTTTGGTGGGATGGCTCAGACCAGTGACGAAGCTCCTTATCTATTAGCTCTTGGCATAGTTGATATTGAATACAGACGTGTTTCATGTAGCTACCCAAACAAAAACATAACAATTAAGATGGATGAGAGCAGCAGTAATCCTAATTACTTGGCTTTTGTCATATGGTTTCAACAAGGAATGAGAGACATAACTGCTGTGCAACTCTGTGAGACGCAGAACTTTGTCTGCAAGTTACTGGATCGGACTCATGGAGCAGTCTGGACTACTACCTCTCCACCAAGTGGACCTCTGTCGTTACGGATGCTGTTTAGTGCTGAAGATGGAGAACAAACATGGGTTGTCCCTGTTAGTAACATACCAGAAGACTGGAAGGCTGGAGAGACATATGACTCAGGGGTGCAAGTAGACAAATAG 762 0.4501 MALSLLFPLVTTLLLMQTLADTSCTDCFVQSRASYYPNSEVNGTDAGACGFGSFGATINGGDVSAASNLYRNGVGCGSCYQVRCTNNTYCSDNGVTVVITDQGSGDDTDFILSQRAFGGMAQTSDEAPYLLALGIVDIEYRRVSCSYPNKNITIKMDESSSNPNYLAFVIWFQQGMRDITAVQLCETQNFVCKLLDRTHGAVWTTTSPPSGPLSLRMLFSAEDGEQTWVVPVSNIPEDWKAGETYDSGVQVDK 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30798g00004 253 CDD DPBB_EXLB_N 29 145 - -
Stsc30798g00004 253 Gene3D - 16 146 IPR036908 -
Stsc30798g00004 253 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Stsc30798g00004 253 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Stsc30798g00004 253 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Stsc30798g00004 253 SUPERFAMILY PHL pollen allergen 150 247 IPR036749 -
Stsc30798g00004 253 SUPERFAMILY Barwin-like endoglucanases 15 149 IPR036908 -
Stsc30798g00004 253 PANTHER EXPANSIN-B3 14 250 - -
Stsc30798g00004 253 Pfam Lytic transglycolase 66 140 IPR009009 -
Stsc30798g00004 253 Pfam Expansin C-terminal domain 152 230 IPR007117 -
Stsc30798g00004 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 247 IPR007117 -
Stsc30798g00004 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Stsc30798g00004 253 Gene3D - 147 251 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30798g00004 Stsc-Chr30798 17321 19085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30798g00004 2 249 Expansin Gene Family AT4G17030 42.972 4.72e-63 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30798g00004 - - gmx:100794009 424.861