Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30794g00001 ATGGCTGAACCCAATAGTCTAATTGGTATTGCAATATTCTTCTTCTTCTTCTTCTCCATCATGTGTGTGAGTGTCTTGTCCATTGATAATGATGGGCTTAGTCATGAAGAAGCTGCCTACCTCTTGATGCTTAGGGACTCCCTGTCCCCTCTTGGCTCCTACTGGCTGGACAACACTAGTATGTGCGCATGGAAAGGCGTGGATTGCATCTCCACATTCGGCACTAATTCCAAATACGTAGACCGGATTAACCTCATGTCGATGGGGCTCACCGGAACAGTTCCTTTAGGTCTCAACGATTCCCTCTTCAGACTCTCCTACCTCAATCTCGCTTACAACTCTCTCAGTAGCCCTATGCCTTCCCTTGCCAACCTCTCTTACCTCCAAAGTGTGTACCTTTACTCCAACAACTTCAACTCCATCCCTCACGGTTTCTTCCAGGGTCTGAACGATTTGGAGTACATTAACTTGAGCAACAACACCAACCTTCCACCGTGGACATTCCCCGCCGAGTTGACTAGCATCTCGTCAAGCCTCAAGTTCCTTATCCTTTCCGCTACAAACCTCAGGGGCTTCTTGCCTGAAATATTTGATTCCTTCCCCGTCTTGGATACTCTTGATCTCTCTGAAAACAACCTCAGTGGGTTGTTGCCCAAGTCTTTTGCAAAGCTACGCAGGTTTCGAGCTTTGGATCTCAGCAACCAGAAGGGTAAAACTAAGTTGTTGGGTACGATTCAGTTTCTTTCATACTCGCCAGAATTGTCTTATGTGAACCTTGAGGGGAACTCCTTCCAGGGTTCCATTCCTGACTTATCCAATCGCACCGACCCGCTAGATCTATTGCTTGCAAACAATCGATTAACAGGTGGTCCTCTTCCTATATTTAACGACTCAACAACCGAGGTCACTTTTGGAGGTAATGGATTCTGTTTAAACCATTCTGGGCCATGTGACTACAGAGTCACCACTTTGCTCCAAGTTGCTGAGGCATTTGGTTATCCGTTTCTGTTGGCCAAATCATGGAGACGAAACAATCCCTGTCAAGGTTGGGATTTCATCACTTGTCATAACAATGGCAACATCAGAACTGTCAATTTGACAAATTTGAATTTGATGGGGGCCATATCTCCTGCATTTCAGAATTTAACGGATCTCTATCAACTGTATCTTGGTGGGAATAAATTGAGTGGTTCCATACCAGAGAGCTTGACAACTCTGCAGCATCTCAAGATTCTTGACGTCTCTAATAACAACCTATCAGGAAACATTCCACCATTCTCAAATAAAATGAAGCTCGTTACAGCAGGTAATGCTTTGCTCAGGCAGTCTCAACCTCAACCAAACGGAACTCATAGACCAAGTGCGCCTGCATCCAGACCCTCGCTCTCTCCTCCTTGGATTCAAGGTATATCAATGGTTGGTGTTGGAGTTATTGTAATCTTCATTGCGATTGTTTATGATCAAAGGAGGTGTTTCAGTTTACTACAAAGGATGATACGGAAGAAAGAAGCATTTGTTGAACAGAAAGTTGATGAGTTACTTAAAAGTTACGATTTTGGACTTGCTAAGATATGCAAAATGGATGAAAGTATTGTGTCTATTTTGGGTATAAGAGGGACTTCGGGTTATATTGCACCAGAAATGTTTAGTCGAATGTACGATGGAGTTTCACATAAATCTGATGTTTATAGTTATGGAATGCTAATTCTTGAAATGATAGGAGGAAGAAAGAATTAA 1737 0.4329 MAEPNSLIGIAIFFFFFFSIMCVSVLSIDNDGLSHEEAAYLLMLRDSLSPLGSYWLDNTSMCAWKGVDCISTFGTNSKYVDRINLMSMGLTGTVPLGLNDSLFRLSYLNLAYNSLSSPMPSLANLSYLQSVYLYSNNFNSIPHGFFQGLNDLEYINLSNNTNLPPWTFPAELTSISSSLKFLILSATNLRGFLPEIFDSFPVLDTLDLSENNLSGLLPKSFAKLRRFRALDLSNQKGKTKLLGTIQFLSYSPELSYVNLEGNSFQGSIPDLSNRTDPLDLLLANNRLTGGPLPIFNDSTTEVTFGGNGFCLNHSGPCDYRVTTLLQVAEAFGYPFLLAKSWRRNNPCQGWDFITCHNNGNIRTVNLTNLNLMGAISPAFQNLTDLYQLYLGGNKLSGSIPESLTTLQHLKILDVSNNNLSGNIPPFSNKMKLVTAGNALLRQSQPQPNGTHRPSAPASRPSLSPPWIQGISMVGVGVIVIFIAIVYDQRRCFSLLQRMIRKKEAFVEQKVDELLKSYDFGLAKICKMDESIVSILGIRGTSGYIAPEMFSRMYDGVSHKSDVYSYGMLILEMIGGRKN 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30794g00001 578 FunFam Leucine-rich repeat receptor-like kinase 319 443 - -
Stsc30794g00001 578 SUPERFAMILY RNI-like 80 425 - -
Stsc30794g00001 578 SMART LRR_typ_2 200 223 IPR003591 -
Stsc30794g00001 578 SMART LRR_typ_2 406 430 IPR003591 -
Stsc30794g00001 578 SMART LRR_typ_2 149 170 IPR003591 -
Stsc30794g00001 578 SMART LRR_typ_2 125 148 IPR003591 -
Stsc30794g00001 578 Gene3D Ribonuclease Inhibitor 319 443 IPR032675 -
Stsc30794g00001 578 SUPERFAMILY Protein kinase-like (PK-like) 517 576 IPR011009 -
Stsc30794g00001 578 Pfam Protein kinase domain 511 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30794g00001 578 Pfam Leucine rich repeat N-terminal domain 321 355 IPR013210 -
Stsc30794g00001 578 Pfam Leucine rich repeat N-terminal domain 36 69 IPR013210 -
Stsc30794g00001 578 Gene3D Transferase(Phosphotransferase) domain 1 510 578 - -
Stsc30794g00001 578 MobiDBLite consensus disorder prediction 442 457 - -
Stsc30794g00001 578 Gene3D Ribonuclease Inhibitor 34 310 IPR032675 -
Stsc30794g00001 578 PRINTS Leucine-rich repeat signature 406 419 - -
Stsc30794g00001 578 PRINTS Leucine-rich repeat signature 203 216 - -
Stsc30794g00001 578 Pfam Leucine rich repeat 127 161 IPR001611 GO:0005515
Stsc30794g00001 578 Pfam Leucine rich repeat 178 234 IPR001611 GO:0005515
Stsc30794g00001 578 ProSiteProfiles Leucine-rich repeat profile. 408 430 IPR001611 GO:0005515
Stsc30794g00001 578 PANTHER OSJNBA0070M12.3 PROTEIN 17 486 - -
Stsc30794g00001 578 ProSiteProfiles Protein kinase domain profile. 350 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30794g00001 578 MobiDBLite consensus disorder prediction 442 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30794g00001 Stsc-Chr30794 9219 12038 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30794g00001 160 431 Receptor kinase-like Gene Family AT1G62950 24.653 1.03e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc30794g00001 Pkinase 1.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30794g00001 K00924 - csin:114311327 349.362