Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30790g00003 ATGAGCACCATATATACCCCCTGTCCTCTGCACACACTCTCCCACACTTGCCCATCTCATCTCCTTCGTTCTCTCTTATCCTATCCCATTCTCACACCTCTCACTCACTCTCTCTCTCTCTCTCTCCGTTTTCACAGAAACCAAGAAATGACGAAGGACCTTGAGGTTACCGAGAGAGGCTCTTTCTCCGGCAAGGACTACCATGACCCCCCTCCGGCACCACTCATCGACGCCGAGGAGCTCACCAAGTGGTCCTTCTACAGAGCCCTCATTGCTGAGTTCATAGCCACCCTCCTCTTCCTCTACATCACCGTCCTCACCGTCATCGGCTACAAGAGCCAGAGTGACACCAAAGCCGGCGGCGATATCTGCGGCGGCGTTGGCATCCTCGGCATTGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCGGGAATCTCAGGAGGACACATAAACCCAGCAGTGACATTCGGGTTGTTCTTGGCTCGGAAGGTGTCTTTGATAAGAGCAATATTGTATATGGTGGCTCAGTGCTTGGGTGCTATCTGCGGTGTTGGCTTGGTCAAAGCCTTCCAGTCCTCCCTCTACGTCAGGTACGGCGGCGGTGCCAACTCCCTTGCCGACGGTTACAGCAAGGGCACCGGTTTGGGTGCTGAGATCATTGGAACCTTTGTGTTGGTTTACACCGTCTTCTCCGCCACCGATCCCAAGAGGAATGCCAGAGACTCTCACGTCCCTGTTTTGGCACCACTTCCCATCGGATTTGCTGTGTTCATGGTTCACTTGGCCACCATCCCAGTCACAGGCACTGGCATCAACCCTGCTAGGAGTCTTGGTGCTGCTGTTATCTACAACAAAGACAAGCCATGGGATGACCATTGGATCTTCTGGGTTGGACCATTCATTGGGGCAGCCATTGCAGCTTTCTACCATCAATTCATCCTGAGGGCAGGTGCAGTCAAGGCTCTTGGATCATTCAGGAGCAACCCCAATGTCTGA 1011 0.5351 MSTIYTPCPLHTLSHTCPSHLLRSLLSYPILTPLTHSLSLSLRFHRNQEMTKDLEVTERGSFSGKDYHDPPPAPLIDAEELTKWSFYRALIAEFIATLLFLYITVLTVIGYKSQSDTKAGGDICGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAILYMVAQCLGAICGVGLVKAFQSSLYVRYGGGANSLADGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPNV 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30790g00003 336 NCBIfam MIP family channel protein 92 315 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30790g00003 336 PRINTS Major intrinsic protein family signature 298 318 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30790g00003 336 PRINTS Major intrinsic protein family signature 258 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30790g00003 336 PRINTS Major intrinsic protein family signature 88 107 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30790g00003 336 PRINTS Major intrinsic protein family signature 136 160 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30790g00003 336 PRINTS Major intrinsic protein family signature 222 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30790g00003 336 PRINTS Major intrinsic protein family signature 173 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30790g00003 336 SUPERFAMILY Aquaporin-like 80 320 IPR023271 -
Stsc30790g00003 336 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 57 325 IPR034294 -
Stsc30790g00003 336 FunFam Probable aquaporin PIP1-2 73 334 - -
Stsc30790g00003 336 ProSitePatterns MIP family signature. 154 162 IPR022357 -
Stsc30790g00003 336 Pfam Major intrinsic protein 80 315 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc30790g00003 336 Gene3D Glycerol uptake facilitator protein. 73 336 IPR023271 -
Stsc30790g00003 336 CDD MIP 88 318 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30790g00003 Stsc-Chr30790 26685 29840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30790g00003 36 336 Major Intrinsic Protein MIP AT2G37170 83.721 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30790g00003 K09872 - gmx:100817292 536.184