LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30789g00001	ATGGCTGTTGCTGAGGATGCGGGTGCGAAATTCGGTGGTTCGAGTGAAGATTTGGAGAAAAGTGTAGTGTCATCTGACTCAAATGCTCCAAACGAAGAAGTGGAGAAACCGAAACCCCGAAATGGTTCTGTTGGAAACGGTGTAGAGGCCGATCAGAATCTCAACGGTGTTGATGGCGTTCCAACCACTGTCTCAGTCCCTAATGGCAATCATAATCCCCAAATTGGTGGTCAGATGCAAACTGGTTTGGAAACAAACGGCGGCGGGTTTAAGGTGGGCCATCAGATGGGTAATGGAGTGAGGAATGGAGGGGAGGATGGCAGCGAGAGCTTCGAACGCCAAATGAGGAATTTGGCAGAGCTCTTGTCCAAGTTGAACCCCATGGCTCAGGAGTTTGTGCCCTCTTCACTTGCAAAAAATCATGGATACTTGCCCGGTGCCGGTGGGTTCGGTTTTCCTAACAATTTGCTACTGCCGCCAAATTTTGGCAGTGCCGGTGGCCAACCTAATAGAAGGAGAAAGAATGGCTACAACAATCAGGGGAAGCAAAGAGCAAATCACAAAATAGAAATGGAGAGAAGGGAAGAGATGATTAGGAGGACTGTTTATGTCTCCGATATCGATCAACAGGTCACTGAAGAGCAGCTGGCAGCACTCTTTCTTAACTGCGGCCAGGTTGTTGATTGCCGTGTATGTGGGGATCCAAATTCTATTCTTCGTTTTGCCTTCATTGAGTTTACTGATGAAGATGGTGCAAGGGCTGCTCTGAACTTGTCTGGCACCATGCTTGGATATTACCCAGTGAGAGTGCTGCCATCTAAAACTGCCATTGCACCAGTTAATCCAACATATTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACTATTTATTGCACAAATATTGACAAAAAGGTTACTCAAGCTGACGTTAAACTCTTCTTCGAATCTCTTTGTGGAGAGGTTCAACGCCTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTCGAGTTCACAATAGCTGAAAGTGCAATTGCTGCTCTGAGTTGTAGTGGTGTGATTTTGGGTACGCTGCCGATAAGGGTAAGTCCATCGAAGACACCAGTCCGGTCTCGTGCACCTCGTGGTTCAATGCATTGA	1158	0.4706	MAVAEDAGAKFGGSSEDLEKSVVSSDSNAPNEEVEKPKPRNGSVGNGVEADQNLNGVDGVPTTVSVPNGNHNPQIGGQMQTGLETNGGGFKVGHQMGNGVRNGGEDGSESFERQMRNLAELLSKLNPMAQEFVPSSLAKNHGYLPGAGGFGFPNNLLLPPNFGSAGGQPNRRRKNGYNNQGKQRANHKIEMERREEMIRRTVYVSDIDQQVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDGARAALNLSGTMLGYYPVRVLPSKTAIAPVNPTYLPRSEDEREMCSRTIYCTNIDKKVTQADVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTIAESAIAALSCSGVILGTLPIRVSPSKTPVRSRAPRGSMH	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30789g00001	385	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	299	362	IPR000504	GO:0003723
	Stsc30789g00001	385	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	202	264	IPR000504	GO:0003723
	Stsc30789g00001	385	CDD	RRM2_CID8_like	293	374	IPR034825	-
	Stsc30789g00001	385	CDD	RRM1_CID8_like	198	277	IPR034823	-
	Stsc30789g00001	385	FunFam	Polyadenylate-binding protein-interacting protein 10	291	369	-	-
	Stsc30789g00001	385	FunFam	Polyadenylate-binding protein-interacting protein 11	164	277	-	-
	Stsc30789g00001	385	Gene3D	-	163	277	IPR012677	-
	Stsc30789g00001	385	Gene3D	-	282	379	IPR012677	-
	Stsc30789g00001	385	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	297	373	IPR000504	GO:0003723
	Stsc30789g00001	385	MobiDBLite	consensus disorder prediction	46	72	-	-
	Stsc30789g00001	385	SUPERFAMILY	RNA-binding domain, RBD	189	277	IPR035979	GO:0003676
	Stsc30789g00001	385	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	200	275	IPR000504	GO:0003723
	Stsc30789g00001	385	SUPERFAMILY	RNA-binding domain, RBD	287	380	IPR035979	GO:0003676
	Stsc30789g00001	385	MobiDBLite	consensus disorder prediction	163	186	-	-
	Stsc30789g00001	385	SMART	rrm1_1	201	271	IPR000504	GO:0003723
	Stsc30789g00001	385	SMART	rrm1_1	298	369	IPR000504	GO:0003723
	Stsc30789g00001	385	Pfam	Ataxin-2 C-terminal region	122	136	IPR009818	-
	Stsc30789g00001	385	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR	120	378	-	-
	Stsc30789g00001	385	MobiDBLite	consensus disorder prediction	1	72	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30789g00001	Stsc-Chr30789	4610	9743	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30789g00001	199	361	Eukaryotic Initiation Factors Gene Family	AT1G34140	25.150	1.46e-10	60.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30789g00001	-		-	pcin:129303146	562.762