Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30785g00004 ATGGATTCTGAAAATTATGGTTTAGATGAGTTTTTAGCTTCCCTTTCCTCTGAATGTTCATATGATTTGAACCTCATCAGCCCTTCTGTTTCCTTGTATGAATTGGATTTTCTACATCAATCTCAATTCTCATTATCAGATTTGGATCATAATACCGATTTTGTTTTGAAGCCTAATTGTTCTACCAAATGCTTCACTAACCCAGAACCCGTTTTTGATCCATTGGAAGAACAACTGCTATCTGAATCAACATGGAACTCATTATGCATAATGAACAATTCAATGGAAAATCATTCTAATCAAGTGAGTGCTATGGCAGAAGCTGATTTTCCATCAAGTTCTGAGGTATCCAAGAACTTATCAGAGGCAATTGATGTGGCAGAAGAGTTCGTGAACTTCACTTCAATAGATGATATTTGCCAATGGTTTGATCCTTTCCAAGAGGATAACTCAAACACCTTTCCTGAATCAATGCAATGTGATGCTACTTCCTTTTCTTGGAAATCAGTTATGCATGACTATGAGGATTGTCTCTTGGGAAGCATGGAACCTGAGTTGAACTTGACTGCACCAGTGGTGAGTTCTGCTGATGATACTTGCAGCTTTGAATGCCTATCAGAGTTTGATTTTGATGCGCTGATAGGCTTGTTCTCGGATTCACCAATTGAAGAGCTTTTGAGATGTGAAGAAGCAAATTGCAACAACCCTTTGAATAATAGTTCTAGTTCTGTTTTGGAGTTATCATCAGACAATAATGAAATGGAGATGATGAAGGACATTCCAAATCCATTGAACTTCACCAAAAATCTTGCTTGGTTTGAAGCAAGAAATAACTTGATGCAGCCCATTTCGGAGTTGAACACGACAAACAAGAAGAGAAAGAAAGTGCAGTTAGACTTGGTTATGGATGACAGCCATAGCATTAAGCGAGGAGAGACTGTTCTTGTGCACCCTCAGAAGAAAGAGGAGCCAAAAAAGCCTAGCAAGAAGAAGCATAAGGCAAGGGAGAGTAGTCGGCCGCGGCCAAAAGATCGCCAGCGGATTCAAGACTGCATTCAACAACTGAGAACAATCATCCCTGGCAAGGATGTTAAAGAGTGTAGCATTGATACATTATTAGAGTGTTCCATTAGATACATGAATTTCTTGTCAAGCACTTCACATTATGCAAATAAGCTAGAAGAACCAGATAAGCCTAAGCTTATTGAGCAGGCAAATGGAGTGGTTCTACAAGAGAACAGTGTGGATTTATTTCAAGAGCCACATCAAACATTGTTATGCCCAATTATAGTTGAGGATATGGATCATCCTGGCCAAATGCTTATTGAGATGCTTTGTGAGGAGCAAGAGATATCTCTTGAGTTGGCTGACACAATCAAGGGTCTTGGTTTGAATATTCTGAAAGCAAAGATAGAAACAGGGAACACAAAGCTATGGGCACGCTTCATTGTGGAGGCCAATAGACATGTGACAAAGATAGATGTGTTTTGGTCTCTTCTCCATCTTGTAGAGCAGAAAAACTCTTCTGGGTTATTGGATTCATCAGCTAATAACAAGCATTGCAATAATGTAATGAATGTTGGAAGTAGTTCAGGATTGGAGAACATTAAGAAGAGAAGGAGAGTTGGAACTTTTTTATGTCCATGA 1647 0.391 MDSENYGLDEFLASLSSECSYDLNLISPSVSLYELDFLHQSQFSLSDLDHNTDFVLKPNCSTKCFTNPEPVFDPLEEQLLSESTWNSLCIMNNSMENHSNQVSAMAEADFPSSSEVSKNLSEAIDVAEEFVNFTSIDDICQWFDPFQEDNSNTFPESMQCDATSFSWKSVMHDYEDCLLGSMEPELNLTAPVVSSADDTCSFECLSEFDFDALIGLFSDSPIEELLRCEEANCNNPLNNSSSSVLELSSDNNEMEMMKDIPNPLNFTKNLAWFEARNNLMQPISELNTTNKKRKKVQLDLVMDDSHSIKRGETVLVHPQKKEEPKKPSKKKHKARESSRPRPKDRQRIQDCIQQLRTIIPGKDVKECSIDTLLECSIRYMNFLSSTSHYANKLEEPDKPKLIEQANGVVLQENSVDLFQEPHQTLLCPIIVEDMDHPGQMLIEMLCEEQEISLELADTIKGLGLNILKAKIETGNTKLWARFIVEANRHVTKIDVFWSLLHLVEQKNSSGLLDSSANNKHCNNVMNVGSSSGLENIKKRRRVGTFLCP 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30785g00004 548 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 332 383 IPR011598 GO:0046983
Stsc30785g00004 548 MobiDBLite consensus disorder prediction 324 338 - -
Stsc30785g00004 548 MobiDBLite consensus disorder prediction 309 323 - -
Stsc30785g00004 548 MobiDBLite consensus disorder prediction 309 347 - -
Stsc30785g00004 548 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 320 387 IPR036638 GO:0046983
Stsc30785g00004 548 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 84 523 IPR043561 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30785g00004 Stsc-Chr30785 27226 29428 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30785g00004 297 514 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 40.708 6.60e-44 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30785g00004 - - adu:110281254 697.197