Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30785g00003 ATGCCATTTCGAGCTCGCACTGCAATATTCCGTTGGTCTCTGCATAGTGTTCCTTACAGTGCACATCACCATCAACCTCATTCTCTTCACTCTTCTTCTTATTCTTCTTCCATTCTCCACAAGTTCTCTTCTTTCGCCCAGTCGCAGGTTCACGGTCAATCTGTTGAACCATGTGACGATGATGGATTTTTGCCATGGTTGGAGCGGAAAGCTGGGTGTAGAGTTTCTTCATCGCTTTTAATTGGGAAATCTTCATATGGCAGGTCTCTGTTTGCTTCTAAGGCGATAAAAACTGGAGATTGCATTTTGAAGGTTCCTTACAGAGTGCAAATAACTGCAGATAATCTCCCTGCTAAAGTCAAATCTCTGATCAGTGAGGAAGTTGCGAATATTGCGAAACTTGCTGTTGTTCTTCTAATTGAGCAGAAATTGGGTCAGGACTCTCAGTGGAATCCTTATATCAGTTGTCTACCATGGCAAGAGGAGCCGCATAACATGATTTTTTGGAATGAAAGTGAGCTGGAGATGATTAGACAAAGCTCCATTTATTTGGAAACAATCAACCAAAAGTCTCAAATTGAAAGGGACTTCTTGGCAATCAGGCCTATTTTTGAATGTTTCGGTCAAAGCTTTGGAGATATTACTTATAAAGACTTCATGTATGCATGCACACTAGTTGGTTCTCGAGCATGGGGAAGCACAAATGGTTTATCTCTGATTCCTTTTGCAGATTTTGTAAACCATGATGGGAATTCAGAAGCCATTGTGATGAGTGACGATGACAACCAATTATCAGAAGTTACCTCTGATCGTGACTATGCTCCTGGGGAGCAGGTACTGATAAGATATGGAAAATTTTCAAATGCTACATTGATGTTAGACTTCGGCTTTACAGTCCCATACAACATTTATGACCAGGTTCAGATCCAGTTAGATATACCTAAGCATGATCCTCTGCACAAGATGAAGTTGGAACTCATGCAACAATACTTTGTGCCTCCAAACAAAGATGCAGAAAACTTGAAGCACTCTTGGAATCTCTTCACAATCAAGGAGGTCAGGTCGGCTAAAGGAAAAGGGAAAGGTCTTCCGCAATCGCTTCGTGCTTTTGCCCGTGTTCTTTCTTGTACTAATCGTCAAGAACTTGATGATTTGGTTGTGGAAGCTGCACAAACTGACGGTAGGCTGGGAAGGCGCCCATTACCAGATGTCAACAAAGAGATTCAAGCACACTTGATGTTATCATCATTAATCACCCAGTTAATTGAGGAGCGCAGTGCAGCCATTATGTCGTTGGAGGAGTCTTTCAATTCTTCATCATATTGTGGAAGAGTTTCTGTTAGAAGATTCATGGCCCGGGATCTTCTACACGGCAAACTTCGGATTCTGAATTCTGCTTCTACATGGCTGGAGAACTACTGTAGAAGCTCATTCTAA 1437 0.4196 MPFRARTAIFRWSLHSVPYSAHHHQPHSLHSSSYSSSILHKFSSFAQSQVHGQSVEPCDDDGFLPWLERKAGCRVSSSLLIGKSSYGRSLFASKAIKTGDCILKVPYRVQITADNLPAKVKSLISEEVANIAKLAVVLLIEQKLGQDSQWNPYISCLPWQEEPHNMIFWNESELEMIRQSSIYLETINQKSQIERDFLAIRPIFECFGQSFGDITYKDFMYACTLVGSRAWGSTNGLSLIPFADFVNHDGNSEAIVMSDDDNQLSEVTSDRDYAPGEQVLIRYGKFSNATLMLDFGFTVPYNIYDQVQIQLDIPKHDPLHKMKLELMQQYFVPPNKDAENLKHSWNLFTIKEVRSAKGKGKGLPQSLRAFARVLSCTNRQELDDLVVEAAQTDGRLGRRPLPDVNKEIQAHLMLSSLITQLIEERSAAIMSLEESFNSSSYCGRVSVRRFMARDLLHGKLRILNSASTWLENYCRSSF 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30785g00003 478 CDD SET_RBCMT 70 298 IPR044431 GO:0016279|GO:0018022
Stsc30785g00003 478 Gene3D set domain protein methyltransferase, domain 1 60 298 - -
Stsc30785g00003 478 Pfam Rubisco LSMT substrate-binding 315 429 IPR015353 -
Stsc30785g00003 478 ProSiteProfiles SET domain profile. 71 284 IPR001214 GO:0005515
Stsc30785g00003 478 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 62 421 - -
Stsc30785g00003 478 SUPERFAMILY SET domain 61 302 IPR046341 -
Stsc30785g00003 478 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 56 297 - -
Stsc30785g00003 478 Gene3D - 300 475 IPR036464 -
Stsc30785g00003 478 Pfam SET domain 87 284 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30785g00003 Stsc-Chr30785 21300 26551 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30785g00003 62 277 NAC Transcription Factor Family AT3G56570 24.444 2.64e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc30785g00003 SET 3.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30785g00003 K19199 - gmx:100818002 641.728