Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30776g00002 ATGGCAGATCCAGTTAACTATGGAAATTATGACCGTGATATTGAGCAAGCACTAATTGTTTTAAAAAGAGGCAGTCAGTTAGTAAAGTATTGTCGAAAAGGGAAGCCAAAAGTTGTTCCATTTAGGCTCTCATCAGATGAAACAAGATTGATTTGGCTTTCTCATGGAAAGGAAAAGAGTATAAAATTGTGTTCTGTTTCACGCATCATCCCAGGACAGAGAACAGCTGTCTTTAGAAGGTTTTTGCGTCCTGAAAAGGACTATCTGTCATTTTCACTTATTTACAAAAAAGGAGAACGGTCTCTTGATTTGATATGCAAGGACAAAGCCGAGGTAGAGGTATGGTTTGCAGGCCTTAACGCATTAATACCTTCTGGACAAAATAGTAAGCGCCCTAGAAGTGAGTTTACAGATGATAGTTCTGAATTTGCTCATAATGAACGCCCTTTTGGTGGAGCATTAGAGTTTGCTTCAACAATCGCCCGTGGCAGGTTTTCTGTTGATTCATCTTCAAATGAGAATTCATTGGATTCAGCAGTATCAGATGTGGCACAAGAACATGCAAATATGCCAGTGAGAACAAGTGTTGGAGAGGGTTGTTCTCGTGTTAGCGTGTCAAGTGCTGGCTGTGAAAGTAGTGTATTATCTGGACAAGATGATATAGAATCTCTTGGTGATGTTTTCATTTGGGGAAAAATTTGGGCAGATGGAGCCTCGCGTGGTGATGGGTTGGGGAGTCAAGTCTTTTCATTGACGAATGTGCTAACTCCTAAGCCATTAGAGTCTGATATTGTTATTGATGTTCTTCAGATTGGGTGTGGCGTAGATCACATTGCTCTCATTACAAGGCAAGGAGAGGTGTTTACATGGGGAGATGACTCTGGTGGAAGACTTGGTCATGGGTTGCATAAAAATTATGGTAGACTGCAACTTGTGGAGTCTTTAGCTGTTACCAGTGTAGGTTTTGTTGCATGTGGTGAATACCATACGTGTGCTATATCTACACATGGTGATATTTTCACTTGGGGTGATGACATACATAATGCAGGACTTCTCGGGCATGGCACCGATGCGAGCCATTGGATACCAATGAAGGTTGGAGGTCCTTTAGATGGACTTGTTGTTGTATCTGTAGCATGTGGTACATGGCATTCCGCATTGGTTACATCCACTGGAAAACTTTTTACCTTTGGTGATGGAAAATTTGGTGTCTTGGGCCATGGAGATCGAGAGAGTGTATCATATCCAAAGGAGGTACATTTAACGTATGGACAAAGGGCAATTAAAGTTGCATGTGGAGTATGGCATACAGCAGCAATTATAGAGGTTGTTAGTCATTATGGTCCAAATGCATCTTCATCTAGGAAGCTTTTCACATGGGGAGACGGTGATCGATATCGTCTTGGTCTTGCTAACAAAGATACCTATCTTCAACCAACATGTGTCTCTGCACTGAATGATCATAGTTTTCATCAGGTAGCTTGTGGAACCACTATGACTGTTGCCCTCACTGCATCTGGCCAAGTCTACACTATGGGAGAAACTAAATATGGTCAACTAGGAAACCCAATGTCCAATGGAAGAACACCAACTCCGGTCAAAGATAATTTAGTAGGTGAGGTTGTAGAGGAAATATCATGTGGTTCACATCATGTTGCTGTGCTAACTTCAAAAGGTGAACTCTACACATGGGGTAGAGGCGCCAATGGAAGATTGGGACACGGAGACACAGATGACCATAACACACCAATTTTGGTTGAAGCCTTTAGAGACAGGCTTGTAAAGCATGTTTCTTGTGGCTCAAGCTTTACATTTTGTGTATGCATGCATAAGTGGATCTCCGGAGCTGACCAATCAGTTTGCTCTGGTTGTCGTCAACCGTTTGGCTTTACAAGAAAAAGGCATAATTGTTATAATTGTGGATTGGTGTTTTGTCATCTTTGTAGCTCTAAAAAGTCACCAAGAGCAGCACTGGCTTCAACACCTAGTAAACCACATCGTGTGTGTGATTCTTGTTATCCTAAGCTTAAAGTTCCTGAGACTAGTAGTCCTTATTTCACTTTCAATAAAGATGTCACTCGTCCTCATAGAAAGGAAAGATTTAATAGAAAAGAGGCAAAGAATGCAAGAATCCTCTTGTTACCCAGCATTGATCCTGTAAAATACTTTGTGACATTGACGGGTAAGAATACAAGTTTGCATGACTCTTCTTCCACTGTTCGAGTTACTCAATCTCCTTTAAGTAATCCAATGGAAGATGCGTCTCCAAGTTCATCTAGTGTCATGCAGAATGCTTCAATTCCCATTACGTTATCAAGTCAACCTCCGACTCCACCTACACCAACTACTTCCAAACCTCCATCACCGTATGCAAGAAGACCAAGCCCACCACGCTCTACCTCCCCCGGATTTTCGAGAAGCCTTATTGATAGTTTAAAGAAGACAAATGATCTTTTGAATCAAGAAGTCTCTAAATTAAAATACCAAAATCAAATACTGAAGCAAAATAGTGATATGCAAGATATGAAGATTCAGGATTTTGAGAAAAAGATTGACGAATCTACCTCATTGATTAAAGAGGAATCGTCTAAGCATAAAATGTTGAAGGAATATCTCCAGCGCATGACAGATCAGTTGAGGGAAGTGACTGAGAACTTGCCACCAGTTCCTGATTATGAATCCTTAATAACCTTGCATACTCATGCTGAAACATTTCTTAAAGAAAATACAGAATTCAAATCTTTATTGCCATTAGCTTTGGAGTCAGAGGCACAAAGTGCAAATGATATACATGGCTTTGACAATGACTCTCATAAACTTCCAGAACAAAGAGTGGAAGATAATGTTGACGCTTCTCGAGCTGGTTCATCTATGAATGGAGGAAGTGCATTTCAAGAAAGCAATGATTCTTCATCTTTGTTGAGTACAAAAGCACTTCAGCTAATCTCAGTAAATAGGTTGAGACCACCTAACCCTCACAAACCCGGTAATGATAAAGAAGAAGAAATAGCGAACATCGAACAATTTGAACGTGGTGTTTATATAACATTTGTAGAACTACCTTCTGCTAGAAAAGTTTTCAAAGGAATTAGATTCAGTAAGCGTAAATTCACGGAAGCTCAGGCGGCAGAATGGTGGAACCAAAACAAAGATAGGGTGCTTATGAAATACGGTCCAGAACCTATGCCGGATGCAGCTACTACTATAACTCATCTATCAGTCCCAGTAGAAGCTGAACAATGTTGA 3246 0.4057 MADPVNYGNYDRDIEQALIVLKRGSQLVKYCRKGKPKVVPFRLSSDETRLIWLSHGKEKSIKLCSVSRIIPGQRTAVFRRFLRPEKDYLSFSLIYKKGERSLDLICKDKAEVEVWFAGLNALIPSGQNSKRPRSEFTDDSSEFAHNERPFGGALEFASTIARGRFSVDSSSNENSLDSAVSDVAQEHANMPVRTSVGEGCSRVSVSSAGCESSVLSGQDDIESLGDVFIWGKIWADGASRGDGLGSQVFSLTNVLTPKPLESDIVIDVLQIGCGVDHIALITRQGEVFTWGDDSGGRLGHGLHKNYGRLQLVESLAVTSVGFVACGEYHTCAISTHGDIFTWGDDIHNAGLLGHGTDASHWIPMKVGGPLDGLVVVSVACGTWHSALVTSTGKLFTFGDGKFGVLGHGDRESVSYPKEVHLTYGQRAIKVACGVWHTAAIIEVVSHYGPNASSSRKLFTWGDGDRYRLGLANKDTYLQPTCVSALNDHSFHQVACGTTMTVALTASGQVYTMGETKYGQLGNPMSNGRTPTPVKDNLVGEVVEEISCGSHHVAVLTSKGELYTWGRGANGRLGHGDTDDHNTPILVEAFRDRLVKHVSCGSSFTFCVCMHKWISGADQSVCSGCRQPFGFTRKRHNCYNCGLVFCHLCSSKKSPRAALASTPSKPHRVCDSCYPKLKVPETSSPYFTFNKDVTRPHRKERFNRKEAKNARILLLPSIDPVKYFVTLTGKNTSLHDSSSTVRVTQSPLSNPMEDASPSSSSVMQNASIPITLSSQPPTPPTPTTSKPPSPYARRPSPPRSTSPGFSRSLIDSLKKTNDLLNQEVSKLKYQNQILKQNSDMQDMKIQDFEKKIDESTSLIKEESSKHKMLKEYLQRMTDQLREVTENLPPVPDYESLITLHTHAETFLKENTEFKSLLPLALESEAQSANDIHGFDNDSHKLPEQRVEDNVDASRAGSSMNGGSAFQESNDSSSLLSTKALQLISVNRLRPPNPHKPGNDKEEEIANIEQFERGVYITFVELPSARKVFKGIRFSKRKFTEAQAAEWWNQNKDRVLMKYGPEPMPDAATTITHLSVPVEAEQC 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30776g00002 1081 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 624 682 IPR013083 -
Stsc30776g00002 1081 MobiDBLite consensus disorder prediction 732 807 - -
Stsc30776g00002 1081 MobiDBLite consensus disorder prediction 929 970 - -
Stsc30776g00002 1081 ProSiteProfiles BRX domain profile. 1003 1058 IPR013591 -
Stsc30776g00002 1081 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 615 677 IPR017455 -
Stsc30776g00002 1081 SUPERFAMILY RCC1/BLIP-II 225 612 IPR009091 -
Stsc30776g00002 1081 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 559 610 IPR000408 -
Stsc30776g00002 1081 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 225 284 IPR000408 -
Stsc30776g00002 1081 MobiDBLite consensus disorder prediction 772 796 - -
Stsc30776g00002 1081 SMART fyve_4 607 678 IPR000306 GO:0046872
Stsc30776g00002 1081 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 285 336 IPR000408 -
Stsc30776g00002 1081 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 378 388 IPR000408 -
Stsc30776g00002 1081 Gene3D - 13 132 IPR011993 -
Stsc30776g00002 1081 MobiDBLite consensus disorder prediction 732 771 - -
Stsc30776g00002 1081 MobiDBLite consensus disorder prediction 950 970 - -
Stsc30776g00002 1081 Pfam Regulator of chromosome condensation (RCC1) repeat 392 440 IPR000408 -
Stsc30776g00002 1081 Pfam Regulator of chromosome condensation (RCC1) repeat 457 503 IPR000408 -
Stsc30776g00002 1081 Pfam Regulator of chromosome condensation (RCC1) repeat 506 555 IPR000408 -
Stsc30776g00002 1081 Pfam Regulator of chromosome condensation (RCC1) repeat 558 607 IPR000408 -
Stsc30776g00002 1081 Pfam Regulator of chromosome condensation (RCC1) repeat 337 387 IPR000408 -
Stsc30776g00002 1081 Pfam Regulator of chromosome condensation (RCC1) repeat 285 333 IPR000408 -
Stsc30776g00002 1081 SUPERFAMILY FYVE/PHD zinc finger 611 682 IPR011011 -
Stsc30776g00002 1081 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 58 870 - -
Stsc30776g00002 1081 PRINTS Chromosome condensation regulator RCC1 signature 554 575 IPR000408 -
Stsc30776g00002 1081 PRINTS Chromosome condensation regulator RCC1 signature 496 514 IPR000408 -
Stsc30776g00002 1081 PRINTS Chromosome condensation regulator RCC1 signature 287 303 IPR000408 -
Stsc30776g00002 1081 PRINTS Chromosome condensation regulator RCC1 signature 378 394 IPR000408 -
Stsc30776g00002 1081 PRINTS Chromosome condensation regulator RCC1 signature 337 353 IPR000408 -
Stsc30776g00002 1081 PRINTS Chromosome condensation regulator RCC1 signature 394 408 IPR000408 -
Stsc30776g00002 1081 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 392 443 IPR000408 -
Stsc30776g00002 1081 MobiDBLite consensus disorder prediction 127 147 - -
Stsc30776g00002 1081 Pfam Transcription factor regulating root and shoot growth via Pin3 1005 1057 IPR013591 -
Stsc30776g00002 1081 Gene3D - 451 623 IPR009091 -
Stsc30776g00002 1081 Gene3D - 156 450 IPR009091 -
Stsc30776g00002 1081 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 271 281 IPR000408 -
Stsc30776g00002 1081 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 507 558 IPR000408 -
Stsc30776g00002 1081 MobiDBLite consensus disorder prediction 932 949 - -
Stsc30776g00002 1081 CDD FYVE_like_SF 621 673 - -
Stsc30776g00002 1081 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 337 391 IPR000408 -
Stsc30776g00002 1081 CDD PH_PLC_plant-like 12 123 - -
Stsc30776g00002 1081 Coils Coil 809 836 - -
Stsc30776g00002 1081 Pfam FYVE zinc finger 611 676 IPR000306 GO:0046872
Stsc30776g00002 1081 Coils Coil 844 885 - -
Stsc30776g00002 1081 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 455 506 IPR000408 -
Stsc30776g00002 1081 SUPERFAMILY PH domain-like 13 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30776g00002 Stsc-Chr30776 11987 18482 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30776g00002 991 1057 Major Intrinsic Protein MIP AT1G31880 35.821 6.28e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30776g00002 - - gmx:100812689 1278.85