Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30775g00005 ATGGAGCACGCCGAATTATCCACTGAACAGGTTCTCAGGAGGGATATCCCATGGGAGACCTACATGTCCACCAAGCTCATCTCTGGGACAACCCTCCAGCTCCTTCGCCGTTACGACCATCGTTCAGAAACCCACCGAGCACAATTGCTGGATGAGGATGGTCCTGCTTATGTTCGCATGTTTGTTCATGTATTGCGTGATATTTTTAAAGAAGAGACTGTAGAATATGTTCTAGCTTTGATCGATGAGATGCTCACAGCCAACCCTAAGAGAGCAAGACTGTTTCATGACAAGACCCTTGCAGATGAAGACACCTATGAACCTTTCCTAAGTTGA 336 0.4673 MEHAELSTEQVLRRDIPWETYMSTKLISGTTLQLLRRYDHRSETHRAQLLDEDGPAYVRMFVHVLRDIFKEETVEYVLALIDEMLTANPKRARLFHDKTLADEDTYEPFLS 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30775g00005 111 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 2 110 IPR004908 GO:0000221|GO:0046961|GO:1902600
Stsc30775g00005 111 Pfam V-ATPase subunit H 3 110 IPR004908 GO:0000221|GO:0046961|GO:1902600
Stsc30775g00005 111 SUPERFAMILY ARM repeat 8 110 IPR016024 -
Stsc30775g00005 111 Gene3D - 3 111 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30775g00005 Stsc-Chr30775 19360 20322 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30775g00005 1 110 Primary Pumps ATPases(2) AT3G42050 78.182 1.59e-58 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30775g00005 K02144 - lja:Lj4g3v0913490.1 202.216