Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30774g00001 ATGAGAACCTCATTGTGTTCTGGCATTTTTCTGTTCAGTTTCGTATTCATTTGCCTGAATAATGTAACAGTAACGGTGTTAGGATCTTCCTTCAGCAATGACCTCCACACTCTGCTCAAGCTCAAGGAAGCTATGAAGGGATCAAAAGCCAAACCCGACGCGCTTCAAGACTGGAAATTCTCAACCTCTATCTCCGCTCACTGTTCATTCTCCGGCGTCACCTGCGACCGCCATAACTTCCGTGTCGTCGCTCTTAACGTCTCCTTTGTTCCCCTATTCGGCACCATTCCGCCGGAGATAGGCCTCTTGGACAAGCTCGAGAATCTTACCCTCTCATCGGACAATCTCACCATGGAGCTTCCCATGGAGCTCGCCAATCTCACCTCCCTCAAGCTCCTCAACATCTCTCACAACTCCTTTTCCGGTCGCTTCCCCGGCCAGATCACCGTCTCCATGACGGAACTCGAAACTCTCGATGCCTACGACAACAGCTTCAACGGAAACTTACCAGAGGAGTTCGTGAGGCTGGAGAAGCTGCGGTGTCTCAACCTGTCCGGCAACTATTTCTCCGGCGAGATTCCCGATAGTTACTCTGAGTTCCAGAGCTTGGAGTATCTGAACCTGGCCACAAACTGCTTAACCGGCATGATTCCAAGAAGCTTGGTGAAATTGAAGAAGCTGACACATCTCTACCTCGGGTATGTGAATTCCTACACAGGCGGAGTACCAACAGAATTTGGTTCGTTCGAGTCGTTGCAACTGCTTGATTTGTCCAACTGTAACTTGACCGGTGAGATTCCTCCCACGCTCAGCGCGTTAACTAATTTGCACTCTCTCTTTCTTCAAATGAACAACCTTACGGGAACCATTCCATCAGAACTCTCTAATATGATTAGCCTCAAGTCGTTGGATCTCTCCTACAACGAATTAACGGGCGAGATTCCTCTTACCTTCTCCAAGCTCACCAATCTCACGCTAATGAATTTCTTCCAGAACAAACTCCGAGGCAACATCCCATCCTTCGTTGGGGACCTCCCGAACCTGGAGACGTTTCAGGTTTGGGGTAACAACTTCTCAAATGTGCTTCCACCCACCCTTGGCCACAACGGAAGATTATTATTCTTCGACGTCACAAAGAACCACTTCACTGGAGAGCTCCCTCGGGAGCTTTGCAAATCAGGGAGGTTGAAAACGTTCTTGGCCACCGGTAACTTCTTCTACGGCACCATCCCTGAAGGAATAGGAGGTTGCGTTACGTTGCAGGAGATAAGAATTAGTGATAACTTCCTCGAAGGACAAGTTCCTCCCGGGATCTTTAACTTGCCAGCTGTCACTATCATCGAGATGGGGAATAACCGTTTTAACGGAACACTTCCTTCTGATATTTCCGGCGATTCCCTCGGGATCCTAAACCTCTCCGGCAACAAGTTCACCGGAAGGATTCCGCCGGCGCTCGAGAATCTCAAGAAACTTCAGACGCTTTTGCTCGACGCGAACCAGTTCGTTGGAGAGATTCCAGGGGAGGTGTTCGACTTGCCGCCGTTGATCAAGGTCAACATGAGCGGCAACAATCTCACCGGGCAGATTCCGGAGTCGCTGACTCGCTGTCGCTCCCTGACGGCGGTTGACCTTAGCCGGAACATGCTCACTGGAGAGATTCCGAAAGGCTTAAAAAACCTCACAGTTCTAAGCATCTTGAACCTCTCAAGAAACCACATCACCGGAACAGTTCCCGACGAGATTCGCTTCATGACGAGCCTCAACACGCTCGATCTCTCCGACAACAACTTCGTCGGAAGAGTCCCGACGGGTGGCCAGTTCGTGGCCTTCAACGACAGGTCGTTTGCAGGGAACCCTAACCTCTGCACCCCACACCAGCGCTATTGTCCTTCCGCCGCCAACCCTGCATCTGGAAAAAGCCACAATCCTCTGAGTTCAAAATCAACTAAGGTAGTCATAATCGCAATCGTAATCTCCACGGCGGTGCTTTTGGCTCTGGTGACGGTATACCTGATGAGGAAGAGGAAGCACCAGAAAGAAATGTCGTGGAAGCTGACGGCGTTCCAGTCAAGTCTGAAAATGAAGGCGGAGGAGGTAGTGGAATGCTTGAAAGAAGAGAACATAATTGGAAAAGGAGGAGCGGGGATCGTGTACCGCGGGACCACTCCAAAGGGAACGGAGGTAGCCATAAAGAGGCTTGTGGGACAAGGAAGTGGAAGAAACGATTACGGCTTCAAGGCGGAGATAGAGACGTTAGGGAAGATAAGGCACAGGAACATAATGAGGCTTCTAGGGTACGTGTCTAACAAGGACACGAACCTGTTGCTGTATGAGTACATGCCAAATGGGAGCTTGGGAGAGTGGCTGCATGGTGCGAAAGGAGGGCACCTGACGTGGGAAATGAGGTACCGGATTGCGGTGGAGGCAGCCAAGGGGCTCTGCTATTTGCACCATGATTGCTCACCGTTGATCATTCACAGGGATGTCAAGTCCAATAACATCTTGCTTGATCACAACTTTGAGGCACACGTCGCCGATTTTGGACTCGCCAAGTTCTTGCTGGATCCTGGTGCCTCTCAGTCCATGTCCTCCATTGCTGGCTCCTACGGCTACATTGCTCCAGAGTACGCTTACACATTGAAAGTGGATGAGAAGAGCGACGTATACAGCTTTGGAGTAGTGCTGTTGGAGCTGATAGTAGGAAGGAAGCCAGTGGGAGAGTTCGGAGATGGCGTTGACATCGTTGGATGGGTCAACAAGACCATGTCGGAGCTGTCTCAGCCGTCCGATGCAGCTTCGGTTTTGGCAGTGGTGGACCCCAGGCTCAATGGGTATCCATTGGGCAGCGTCATCCACATGTTCCACATAGCTATGATGTGTGTTAGAGAAATTGGGCATGCTAGGCCTACCATGAGGGAAGTTGTTCATATGCTCACTAATCCACCTCAATCTACTACCCATCATAACCTAATTAATCTCTAG 2982 0.5047 MRTSLCSGIFLFSFVFICLNNVTVTVLGSSFSNDLHTLLKLKEAMKGSKAKPDALQDWKFSTSISAHCSFSGVTCDRHNFRVVALNVSFVPLFGTIPPEIGLLDKLENLTLSSDNLTMELPMELANLTSLKLLNISHNSFSGRFPGQITVSMTELETLDAYDNSFNGNLPEEFVRLEKLRCLNLSGNYFSGEIPDSYSEFQSLEYLNLATNCLTGMIPRSLVKLKKLTHLYLGYVNSYTGGVPTEFGSFESLQLLDLSNCNLTGEIPPTLSALTNLHSLFLQMNNLTGTIPSELSNMISLKSLDLSYNELTGEIPLTFSKLTNLTLMNFFQNKLRGNIPSFVGDLPNLETFQVWGNNFSNVLPPTLGHNGRLLFFDVTKNHFTGELPRELCKSGRLKTFLATGNFFYGTIPEGIGGCVTLQEIRISDNFLEGQVPPGIFNLPAVTIIEMGNNRFNGTLPSDISGDSLGILNLSGNKFTGRIPPALENLKKLQTLLLDANQFVGEIPGEVFDLPPLIKVNMSGNNLTGQIPESLTRCRSLTAVDLSRNMLTGEIPKGLKNLTVLSILNLSRNHITGTVPDEIRFMTSLNTLDLSDNNFVGRVPTGGQFVAFNDRSFAGNPNLCTPHQRYCPSAANPASGKSHNPLSSKSTKVVIIAIVISTAVLLALVTVYLMRKRKHQKEMSWKLTAFQSSLKMKAEEVVECLKEENIIGKGGAGIVYRGTTPKGTEVAIKRLVGQGSGRNDYGFKAEIETLGKIRHRNIMRLLGYVSNKDTNLLLYEYMPNGSLGEWLHGAKGGHLTWEMRYRIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLDHNFEAHVADFGLAKFLLDPGASQSMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIVGRKPVGEFGDGVDIVGWVNKTMSELSQPSDAASVLAVVDPRLNGYPLGSVIHMFHIAMMCVREIGHARPTMREVVHMLTNPPQSTTHHNLINL 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30774g00001 993 FunFam LRR receptor-like serine/threonine-protein kinase EFR 342 634 - -
Stsc30774g00001 993 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 669 779 - -
Stsc30774g00001 993 Pfam Leucine Rich Repeat 202 224 IPR001611 GO:0005515
Stsc30774g00001 993 Pfam Leucine Rich Repeat 251 273 IPR001611 GO:0005515
Stsc30774g00001 993 Gene3D Ribonuclease Inhibitor 33 151 IPR032675 -
Stsc30774g00001 993 SMART serkin_6 703 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30774g00001 993 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 237 341 - -
Stsc30774g00001 993 ProSiteProfiles Leucine-rich repeat profile. 299 320 IPR001611 GO:0005515
Stsc30774g00001 993 Gene3D Phosphorylase Kinase; domain 1 667 779 - -
Stsc30774g00001 993 ProSiteProfiles Protein kinase domain profile. 703 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30774g00001 993 Gene3D Ribonuclease Inhibitor 152 239 IPR032675 -
Stsc30774g00001 993 Gene3D Ribonuclease Inhibitor 240 341 IPR032675 -
Stsc30774g00001 993 Pfam Protein tyrosine and serine/threonine kinase 704 933 IPR001245 GO:0004672|GO:0006468
Stsc30774g00001 993 FunFam Leucine-rich repeat receptor-like protein kinase 31 195 - -
Stsc30774g00001 993 Pfam Leucine rich repeat N-terminal domain 33 76 IPR013210 -
Stsc30774g00001 993 Gene3D Transferase(Phosphotransferase) domain 1 780 990 - -
Stsc30774g00001 993 SUPERFAMILY RNI-like 85 428 - -
Stsc30774g00001 993 Gene3D Ribonuclease Inhibitor 342 636 IPR032675 -
Stsc30774g00001 993 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 308 979 - -
Stsc30774g00001 993 SMART LRR_typ_2 200 223 IPR003591 -
Stsc30774g00001 993 SMART LRR_typ_2 560 584 IPR003591 -
Stsc30774g00001 993 SMART LRR_typ_2 249 273 IPR003591 -
Stsc30774g00001 993 SMART LRR_typ_2 488 512 IPR003591 -
Stsc30774g00001 993 SMART LRR_typ_2 345 369 IPR003591 -
Stsc30774g00001 993 SMART LRR_typ_2 297 320 IPR003591 -
Stsc30774g00001 993 Pfam Leucine rich repeat 274 334 IPR001611 GO:0005515
Stsc30774g00001 993 Pfam Leucine rich repeat 490 549 IPR001611 GO:0005515
Stsc30774g00001 993 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 780 992 - -
Stsc30774g00001 993 ProSitePatterns Serine/Threonine protein kinases active-site signature. 824 836 IPR008271 GO:0004672|GO:0006468
Stsc30774g00001 993 SUPERFAMILY RNI-like 362 607 - -
Stsc30774g00001 993 SUPERFAMILY Protein kinase-like (PK-like) 690 978 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30774g00001 Stsc-Chr30774 13146 17468 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30774g00001 34 987 Receptor kinase-like Gene Family AT1G75820 61.885 0.0 1197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc30774g00001 PK_Tyr_Ser-Thr 8.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30774g00001 - - lja:Lj3g3v3375770.1 1433.7