Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30772g00004 ATGGAAGAGCAAGGGCAGCAACAACAACAGCATCAAGACCCGAACAGAAGCCATGGTCATAGCCATGGAGCTGGTGCTGCTGCTGGTGGTTCTTCCTCTTCCTCTGAGAAACAGACCGAACCGGTCAGGTCTAGATGGACACCCAAACCGGAGCAAATACTTATTCTCGAGTCCATCTTCAACAGCGGCATGGTTAACCCTCCAAAAGACGAGACCGTCAGGATAAGGAAGCTTCTAGAGAAGTTTGGTGCCGTCGGCGACGCGAACGTGTTCTACTGGTTTCAAAACCGTAGGTCCAGATCTCGTCGCCGACAGCGCCAGATGCAGCAGCAGCAACAACAGCAACACCAGCTCGGTGTTGGTGTTGTTGGCGTTGGTGTTGGTGGTGCAATTCAGTGTGATCAAGGTCACGCTGGTCCACCTGCACCTTCAGCAGTGGGGAGTGCTTTGGGTTTCGGTGATTCTTCTTCTTGTTCTTATCAACTCCCTCCTCCTCCTTCTGTTGCTGGTGGCGGTTCTTCTTCTTCTTCATCTTCTTTCGGCGGTGAGCAAGAAGCCATGGATAACTTCTTCACTTCTGTTGCTCCTCATCATCATCCTCAAATGGGGTTCCAGGAAATTGATCACACTTCATCTTTGTTCCCTCATGTTCCTCCAAATTTCACCTACAACTCTGGATTTGGGAGCAATAATGTGTCAGGATTCATCACAGTGTTCATCAATGGAATTGCAACAGAAGTTCCAAGAGGTCTTATAGACATCAAAACGTTGTTTGGTGAAGATGCAATTTTAGTTCATTCTTCTGGAGTGCCAGTTCCAACCAATGAGTTTGGGTTCTTGATGCAGAGCTTGCAGCATGGTGAAAGCTACTTTCTGGTTCCAAAGCCAACATAA 894 0.4832 MEEQGQQQQQHQDPNRSHGHSHGAGAAAGGSSSSSEKQTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQRQMQQQQQQQHQLGVGVVGVGVGGAIQCDQGHAGPPAPSAVGSALGFGDSSSCSYQLPPPPSVAGGGSSSSSSSFGGEQEAMDNFFTSVAPHHHPQMGFQEIDHTSSLFPHVPPNFTYNSGFGSNNVSGFITVFINGIATEVPRGLIDIKTLFGEDAILVHSSGVPVPTNEFGFLMQSLQHGESYFLVPKPT 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30772g00004 297 Pfam Homeodomain 43 103 IPR001356 GO:0003677
Stsc30772g00004 297 MobiDBLite consensus disorder prediction 161 183 - -
Stsc30772g00004 297 ProSiteProfiles 'Homeobox' domain profile. 39 104 IPR001356 GO:0003677
Stsc30772g00004 297 MobiDBLite consensus disorder prediction 27 41 - -
Stsc30772g00004 297 PANTHER WUSCHEL-RELATED HOMEOBOX 11 13 295 IPR044558 GO:0003700|GO:0048830
Stsc30772g00004 297 MobiDBLite consensus disorder prediction 1 48 - -
Stsc30772g00004 297 SUPERFAMILY Homeodomain-like 36 110 IPR009057 -
Stsc30772g00004 297 FunFam WUSCHEL-related homeobox 11 43 110 - -
Stsc30772g00004 297 Gene3D - 28 120 - -
Stsc30772g00004 297 SMART HOX_1 41 108 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30772g00004 Stsc-Chr30772 23009 26265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30772g00004 10 293 Wox Gene Family AT3G03660 52.218 3.25e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc30772g00004 Homeodomain 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30772g00004 - - adu:107494279 392.119