Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30772g00003 ATGATGATGAGCTCACAGCACTTCAACAATGGTGGTAGTGATGGTGGTGGGTTCTTCCCTTCACTCTCAGTTCCTCCTCCTTCATCTTTTCCCCTTGTTATTCCTCCTCCTCCTCCTCTGTCCAACACTTCAGGGGTTGTTATGATGGGTCATCATGATGATGCAAATGGGGTAGAGGATCCTGAACTCAGGATGATGGGGCTTCAGATTTTGAGCCATTCAAAGTGGAAAAACGGAACCAACAACAACAACTACAGTGAAAACAAGAGCTTGTCTTTGAGGATTGGCGATGAGGAAGTTGAAATAGATGGAGGAGAAGAAGAAAGAGAAGAAGGCAATAATAAAGGGCCTTGCTCTTCTTCTTCTAATGGAGGAAAAAACGGTCATGTCAAACTCTGTGCTAGAGGCCATTGGAGACCTGCTGAAGATGCTCAACTTAAGGCACTTGTTTCTCAATATGGCCCTCAAAACTGGAACTTGATTGCAGAACATCTCAAAGGAAGATCAGGGAAGAGTTGTAGACTGAGGTGGTTTAATCAGCTAGATCCTAGAATTAACAGAAGAGCTTTCTGTGAAGAGGAAGAGGAGAGGCTGTTAACAGCACACAAAATGTATGGAAACAAATGGGCCATGATTGCAAGGCTTTTCCCTGGGAGAACAGATAATGCAGTCAAGAATCATTGGCATGTAATCATGGCTAGGAAGCAGAGAGAGCAATCAAGCATGTATAGAAGGAGAAAACCTCCTGTTTTCTCTCCTCCTCCTTCTGCTAATGAAGAAGCTGCTGCTGGTGTTGTTCTTCCTCCTCCTAAGGGTTTGGAATTGACTCTCTCATCAAACAATAATAATAATGATGTAGCAAGTGATAATGATCAGTTAACTATCTCAGATGAATCTGTCTCAACAACTTCCACCGATACATTTTTTCATAAGCTTGGTGTGGGTGGAGTGGTGAATGTGGGTTATGAGAAATTCTATGGTGGTTGGAACAATGGAAGAAGTGAAGTTGTGGGAAAACTTAAGAGTGTGGACCAATCCAATTATGTTTCAGAATCAAATAACTCATCATCAGAAGTCTCAGTATCTGAGTCAGTAGGCACCACCAATAGGTCCTCCTATCTCTCAATTTCTGGAGAAAGTGAAAAGCACAACAAGATTAACAACAACAACAACAACATGCCAGCATTCATTGATTTTCTTGGGGTTGGAGCTACATAA 1218 0.422 MMMSSQHFNNGGSDGGGFFPSLSVPPPSSFPLVIPPPPPLSNTSGVVMMGHHDDANGVEDPELRMMGLQILSHSKWKNGTNNNNYSENKSLSLRIGDEEVEIDGGEEEREEGNNKGPCSSSSNGGKNGHVKLCARGHWRPAEDAQLKALVSQYGPQNWNLIAEHLKGRSGKSCRLRWFNQLDPRINRRAFCEEEEERLLTAHKMYGNKWAMIARLFPGRTDNAVKNHWHVIMARKQREQSSMYRRRKPPVFSPPPSANEEAAAGVVLPPPKGLELTLSSNNNNNDVASDNDQLTISDESVSTTSTDTFFHKLGVGGVVNVGYEKFYGGWNNGRSEVVGKLKSVDQSNYVSESNNSSSEVSVSESVGTTNRSSYLSISGESEKHNKINNNNNNMPAFIDFLGVGAT 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30772g00003 405 FunFam MYB transcription factor 135 186 - -
Stsc30772g00003 405 Pfam Myb-like DNA-binding domain 135 181 IPR001005 -
Stsc30772g00003 405 Pfam Myb-like DNA-binding domain 188 230 IPR001005 -
Stsc30772g00003 405 MobiDBLite consensus disorder prediction 1 22 - -
Stsc30772g00003 405 Gene3D - 135 186 - -
Stsc30772g00003 405 CDD SANT 192 229 IPR001005 -
Stsc30772g00003 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 135 181 IPR017930 -
Stsc30772g00003 405 PANTHER MYB PROTEIN-RELATED 135 306 - -
Stsc30772g00003 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 182 236 IPR017930 -
Stsc30772g00003 405 ProSiteProfiles Myb-like domain profile. 135 181 IPR001005 -
Stsc30772g00003 405 MobiDBLite consensus disorder prediction 239 262 - -
Stsc30772g00003 405 SMART sant 134 183 IPR001005 -
Stsc30772g00003 405 SMART sant 186 234 IPR001005 -
Stsc30772g00003 405 Gene3D - 189 247 - -
Stsc30772g00003 405 SUPERFAMILY Homeodomain-like 135 228 IPR009057 -
Stsc30772g00003 405 MobiDBLite consensus disorder prediction 103 126 - -
Stsc30772g00003 405 FunFam MYB transcription factor 188 255 - -
Stsc30772g00003 405 CDD SANT 138 179 IPR001005 -
Stsc30772g00003 405 ProSiteProfiles Myb-like domain profile. 182 232 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30772g00003 Stsc-Chr30772 11189 12967 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30772g00003 134 405 MYB Transcription Factor Family AT1G69560 45.614 4.01e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30772g00003 Myb_DNA-binding 2.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30772g00003 K09422 - twl:119996400 290.041