Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30759g00001 ATGGCCTCCTCTTCTCCACCCGCCGCCCTCTCCTCCGCCCTCCACTCCATCCGCACCTCCCTCTCCCACCTCTCTTCTCCTTCGCCGGACCCACGCCGTCCCTTCCACAACCCCCGCTGCTTCTCCGCCTTCGCCCGCCGTCTCCAGATCCTCCTGGACCACATCCTCCTCTCCCTCCCGCCCACTCCGCCACCGCCCGTTCAGACGGCGCTGAAAGGCATTGCCGGCGATCTGGAGAAGGCGGCGGAAACGGTTTCGTTGTACGAAAATGCGAGCAAGATCTTCGTTTTGTTGAACTGCAAAACGCTGTGCTCGTCGCTTCAGGAACGAAGCGGCGCTATCTCGGGGTGGCTGGCGTTGCTTGATTCCGGGGTTGAGGAGTTGCCGGAGCTTCGAAAGAAGGTCTCTGATCTTAGCAGAGACATGAAGCTCGCACAATTTAGGGTCACAGAGAATGAAGAAAGAGTGCGATGTGCATTGGAAAAGGAAGGGCAAGGGAGAGAGACAAGCAAAGCAGTGCAGAGTGCCATTGTGATGGATTTGGCTCGTGCTTTCGGGGTCGATCCTGATGATCACGCCGAGCTATGTAATCAAGTGAAACTCTTCAAAGACGATGCCTTGCGGTCCAAGTCTGTCCTTGAGAGAAGAATTTTGGATTCCCTAGAGAGAATTCTTATGAATTGGTTTGTTGAACCTGCCATTGTGACCCGGAACATGGACTTTGTCATTGAAGAAGATGATGCAGCTAATGCTCCAATTATGCCCTTCAAGAATTTCCTTTGCCCGTTGACCAAGGAAGTGATGACAGACCCTGTTGTGGTGCTGGAGTCCTCTCAAACCTACGAGAGGAATGCAATTGAGTATTGGTTTTCGAGATGCATTGAGGACGGCCATGACCCCACTTGTCCGGTCACTGGAACTGTGCTTAAATCCTTAGAGTTGAAGCCCAACATTGGGTTGGCTGGGGCAATTGAGGAGTGGATTGGCAGGGTTGTTGAATATCAAGTCAAATCTGCAGCACAACATCTGATTGAGGAACCGTTGTCTATTGATCAGGTTGAGCGAGCACTCGATAATATTTATAAGGTTTCTGAAGAACACCCCACTAGCAGATATGTCATCAGGAATGCTGGTATTGTGGTGCTGATAGTGACTGTGCTTAACAAGAACTCTAAAACTATTGGATCGCGTTTGAGAAGCAAAGCTCTAATGACTTTACTTAGCATAGCCAAGGATGAAGAAAGCATGAAAATAATGCTTGAACGGGGTATCACTAGATTGGCCATACATAGTCTTATTGGAAACTCTGAGAAAGAGAGAGAGTATGCTGTGAAGTTGTTATCAGAGTTCTGCAATGACAAAGATTTTTGCATAAGAATTGCATTGGAGAAAGGTGCATTAGTTCTACTCTCAAGTATGGCAGGGAATCTGGAGTTTCCTTCTTTGTCCAATTTAGCTGAAGAAGTCTTAAAGAAGATGGAAAGCGTGGAAGCTAATGTTCAATGTTTAGCAGCAGCTGGAAGATTTGAACCATTACTTTCGCGATTACATAATGGTTCTGTTGGAGTTAAGATAGAGATGGCCTCTTTGGTGGGAAGAATGACCTTGACAAATAGCTGCAAAGAACAAATTGCTAGGCACAGCACCAGAGTATTCGTCGAACTGCTGTCTAATCCAGAAGGAATGGGACCAAGTTTGCAAGCATTATATAACTTGTCGGGATTGGATGATAACGCAGCCATCCTTGTCGAGTCTTCAGTCCTTCCATCTCTTTTAGAAGTTCTTTTCAATGAACAGGATCCTTCATGTGAGTTGAAGTCCTTAGCAGCTTCAACAATTGCAAACATAGTCTCAAAGCCAGGGAATTGGGAGCTAGCATCTGCTGACAAGAAGGGAAATCCAATGCAGTCGGAAAACGTTGTGTTCAGGCTTTTGGGACTCTTAGACCCTGTCTCCTCTCAATGCCAACTGATCATTCTCCGAATTCTTTGTGGGATTACTTCATCTCCTCAAGCATCAGAGTCTGTAGCCATGCAAATCATGTCAGGGGGTGGCTTTAGAATGGTCGCACCGTTTCTTCAACACTCGGAAACCGAACACAGACTCTTGGCTTTTAAGTTTACCAGACAGCTATCCGAATGGTGCAGTCAAGATCTAACAGATGAGCTAAGGCTTTCTAACACGCTTACCATTCTTGAAGATAAACTTTCAAATAACCAATCAACAAATGAGGAAAGATCAGAAGCAGCACAGATACTCGCCAACCTTTCGCTCTCAGAAGCCGAGGTGAAGACGCTTTTAGGAGTTAACTTTGTGAAATGGAGTGTAGCTAGTCTCAAGAACCATCAGCGTGTTTCGAATCCAAGGCTTTCACACTCTGCATCTGGAATGCAGGAAGGCCTTCTTGGTCTCTTGCTTCACTATACTAAGAACCTTGATCAGCAAACTCTTAATGTAATCACAGAAAATCACCTCATGTCTGTTTTCTGTGAGCAGCTGGATTATACCTCGAAACCGAAGGTAAAATGCCTTGCTGCTACTGGGTTGAAAAACTTGTCGAAATTAGGAAGCAAGCACGATGCTATTAGTGAATCTAAACCAACATCTTCCAGAAGCTTCTTCCACTCTTACCTTGGCTTCATGTGTGGGAAAGCATCTAGTCAACCTTCTACATGTCCCATTCACAATAGCCCTTGTGACAACTCAACTCAATTGTGCCTTTACAAGACCAATTCTATCAAGCCATTGGTTGATCTCCTCAGTGACAACGACACAAGTGTTCAGATTGCCACGGTGGATGCTCTATCTACTCTCCTTTTAGATTACCAATCGCGTAGCTTCAAAAGAACTGTCGACGAGCTTGAGCATCTCGGCGTGGTTGATTCGGTGATGACTCTTTTCACGGAGGTTAGATCCGGGGATCTTCAGGAGAAGACAATTTGGATAATAGAGAAGATATTAAGAGTGGAGAATCATAGCCAGAAACATGGACTCAATCATTCTCTTGTGAGAGGCTTGGTTGAAGCCTTCAAGAATGGGAATAGCAACACAAGGAAGCTTGCTCAAGATGCTCTAACCCACCTTAAGCAGTTATCAGGTGTTAGTGGTAAGACATCAAGTCAATCTAGATCTAGAAGGTAG 3141 0.4594 MASSSPPAALSSALHSIRTSLSHLSSPSPDPRRPFHNPRCFSAFARRLQILLDHILLSLPPTPPPPVQTALKGIAGDLEKAAETVSLYENASKIFVLLNCKTLCSSLQERSGAISGWLALLDSGVEELPELRKKVSDLSRDMKLAQFRVTENEERVRCALEKEGQGRETSKAVQSAIVMDLARAFGVDPDDHAELCNQVKLFKDDALRSKSVLERRILDSLERILMNWFVEPAIVTRNMDFVIEEDDAANAPIMPFKNFLCPLTKEVMTDPVVVLESSQTYERNAIEYWFSRCIEDGHDPTCPVTGTVLKSLELKPNIGLAGAIEEWIGRVVEYQVKSAAQHLIEEPLSIDQVERALDNIYKVSEEHPTSRYVIRNAGIVVLIVTVLNKNSKTIGSRLRSKALMTLLSIAKDEESMKIMLERGITRLAIHSLIGNSEKEREYAVKLLSEFCNDKDFCIRIALEKGALVLLSSMAGNLEFPSLSNLAEEVLKKMESVEANVQCLAAAGRFEPLLSRLHNGSVGVKIEMASLVGRMTLTNSCKEQIARHSTRVFVELLSNPEGMGPSLQALYNLSGLDDNAAILVESSVLPSLLEVLFNEQDPSCELKSLAASTIANIVSKPGNWELASADKKGNPMQSENVVFRLLGLLDPVSSQCQLIILRILCGITSSPQASESVAMQIMSGGGFRMVAPFLQHSETEHRLLAFKFTRQLSEWCSQDLTDELRLSNTLTILEDKLSNNQSTNEERSEAAQILANLSLSEAEVKTLLGVNFVKWSVASLKNHQRVSNPRLSHSASGMQEGLLGLLLHYTKNLDQQTLNVITENHLMSVFCEQLDYTSKPKVKCLAATGLKNLSKLGSKHDAISESKPTSSRSFFHSYLGFMCGKASSQPSTCPIHNSPCDNSTQLCLYKTNSIKPLVDLLSDNDTSVQIATVDALSTLLLDYQSRSFKRTVDELEHLGVVDSVMTLFTEVRSGDLQEKTIWIIEKILRVENHSQKHGLNHSLVRGLVEAFKNGNSNTRKLAQDALTHLKQLSGVSGKTSSQSRSRR 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30759g00001 1046 Gene3D - 891 1040 IPR011989 -
Stsc30759g00001 1046 Coils Coil 486 506 - -
Stsc30759g00001 1046 SMART Ubox_2 258 327 IPR003613 GO:0004842|GO:0016567
Stsc30759g00001 1046 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 341 IPR013083 -
Stsc30759g00001 1046 CDD RING-Ubox_PUB 259 314 IPR045210 -
Stsc30759g00001 1046 SUPERFAMILY ARM repeat 566 1031 IPR016024 -
Stsc30759g00001 1046 SUPERFAMILY ARM repeat 340 666 IPR016024 -
Stsc30759g00001 1046 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 37 1036 - -
Stsc30759g00001 1046 SUPERFAMILY RING/U-box 252 328 - -
Stsc30759g00001 1046 ProSiteProfiles U-box domain profile. 254 334 IPR003613 GO:0004842|GO:0016567
Stsc30759g00001 1046 Gene3D - 342 857 IPR011989 -
Stsc30759g00001 1046 SMART arm_5 812 854 IPR000225 GO:0005515
Stsc30759g00001 1046 SMART arm_5 716 758 IPR000225 GO:0005515
Stsc30759g00001 1046 SMART arm_5 575 618 IPR000225 GO:0005515
Stsc30759g00001 1046 SMART arm_5 537 574 IPR000225 GO:0005515
Stsc30759g00001 1046 SMART arm_5 367 411 IPR000225 GO:0005515
Stsc30759g00001 1046 SMART arm_5 900 940 IPR000225 GO:0005515
Stsc30759g00001 1046 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30759g00001 Stsc-Chr30759 8488 14379 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30759g00001 256 1035 U-box Gene Family AT1G20780 27.812 7.12e-77 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30759g00001 - - gmx:102659945 1425.99