Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30751g00008 ATGGGAGGAGGTGGCACAGAAGCTTTTCCAGATTTGGGGAAACACTGCCAGCAACAAGGTTGCCACCAACTTGATTTTCTCCCTTTCACCTGTGAAGGCTGCAAACAGGTGTTCTGTTTGGAACACAGAACCTACAAGTCCCATTCTTGCCCCAACTCCGACCACAACAGCAGAAAAGTCATCGTTTGTGAAACATGTTCAATGTCCATTGAGATCACAGGGCATGTAGGACAGGACGAAGAAGCCATCTTGAAGAAGCACCAAAACTCGGGAACTTGTGACCCCAAAAACAAAAAGAAACCAGTTTGCCCAGTAAAGCGTTGCAAGGAGGTTCTAACCTTCTCAAATTCAAGTACATGCAAAACTTGCCACATTAAGGTGTGCCTCAAGCACCGTTTCCCAGCCGATCATGCTTGCGGCAAAGCAGTATCGGCTCCGGTGTCAGTTTCTCCTTCGACTCCTTCTTCTGCTAGTGGATGGTGGTGGAATAACAAGTTCTTGGCTGCTTTTGCTTCGAGGAATGGACAAGATTGTGCCAAGAGTGGGGGAAGTAGTTCAGCTTCAACTCCTAGTAACCCTTCTGTTAAGGCATACTGA 597 0.474 MGGGGTEAFPDLGKHCQQQGCHQLDFLPFTCEGCKQVFCLEHRTYKSHSCPNSDHNSRKVIVCETCSMSIEITGHVGQDEEAILKKHQNSGTCDPKNKKKPVCPVKRCKEVLTFSNSSTCKTCHIKVCLKHRFPADHACGKAVSAPVSVSPSTPSSASGWWWNNKFLAAFASRNGQDCAKSGGSSSASTPSNPSVKAY 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30751g00008 198 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 8 194 - -
Stsc30751g00008 198 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
Stsc30751g00008 198 Pfam AN1-like Zinc finger 103 142 IPR000058 GO:0008270
Stsc30751g00008 198 FunFam AN1-type zinc finger protein 2B isoform X1 6 67 - -
Stsc30751g00008 198 Gene3D - 78 155 IPR035896 -
Stsc30751g00008 198 ProSiteProfiles Zinc finger AN1-type profile. 97 147 IPR000058 GO:0008270
Stsc30751g00008 198 MobiDBLite consensus disorder prediction 175 198 - -
Stsc30751g00008 198 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
Stsc30751g00008 198 SUPERFAMILY AN1-like Zinc finger 95 143 IPR035896 -
Stsc30751g00008 198 Gene3D - 2 67 IPR035896 -
Stsc30751g00008 198 MobiDBLite consensus disorder prediction 177 198 - -
Stsc30751g00008 198 SUPERFAMILY AN1-like Zinc finger 9 57 IPR035896 -
Stsc30751g00008 198 SMART AN1_Zf_4 16 55 IPR000058 GO:0008270
Stsc30751g00008 198 SMART AN1_Zf_4 103 144 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30751g00008 Stsc-Chr30751 32792 34303 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30751g00008 1 178 C2H2 Transcription Factor Family AT3G28210 57.865 3.56e-74 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30751g00008 - - gmx:100500384 303.523