Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30746g00005 ATGTCTAACACATCATCTTCCTCTTCAGCTAACCAGCCATGCCCAAACAACAAGGGCAAAGAGAAAGTCACTTATGATAATTCAAGCAGTGATGATGATCATCATGGTTTAATGGATCCCAACAACAAGGATGGTTCTGCTGCTTTTGCTGTTGCTGTTGAAGAAAGTAGTGATGATTCCACTGAAGAAGGGGAATCCAGTCCTGACAACTCTGTATACAATTGCGGTTATTGTGAGAAGAGCTTCTCTTCCCCACAAGCTCTTGGGGGTCATCAAAACTGTCACAAAATGGAGAGATTGTATCAATCCTATGCCAATAATAACATCGGAAATGGGATCCAATTCTTGAATAACATTGGCATGGGTGGTGTGGGAATGAACTCATCAAGCTTCATGCAGCTACCTTCTTCACCAACCATCCCTCCTTTCAGGCCCTTCTTCGGTGGGGGAGCTAATAGCCTTCATCACTACCAACCCATGAATATGATGACGGGAAACAACAATCTTGAAATTAACAATAGCTATCATCCTTATCATCATGGTTTGTTCCATAACAATGCAGCGAGACCATCAAACCTTTTCAGGCCTGTTCCTGTGCGTGCTGGTATTGCATACCCTCATGCTGGCTCTGGTTCTGGTTCTGGTGCATTGGGGGTTGGAAACATTATTGGTGCATATCAGCCCAACATTGCATACCCTCATGCTGGTTCTGGTGCAGTTGGGATTAGAAGCATCAGTGGTGCATTTCCGCCTCCGTATGGATTTCAAAACAGAGGCCTCTATGGTGCAGGTGCATCTGAGTATCCTCTTCCTCCTCTAGCTGCTGCTGGGATTGGAAGAATTAGAGAGGATGACGACGACAGTGGTGGTGTGATGAACAAGAAGCCTAGGGTGAATGAGGCTTGTGATGAGACCCAACATGGTGAATTTGAGTTTGTTTTGCTTCCATCTGCAGCAAGAAACAACAATGACGTTAAGGTGGAGATTGACTTTGGTTTGGTTCCAAACAGAGACGGAGATGGAAATGCAGAAAGCCTTAATTAA 1044 0.4473 MSNTSSSSSANQPCPNNKGKEKVTYDNSSSDDDHHGLMDPNNKDGSAAFAVAVEESSDDSTEEGESSPDNSVYNCGYCEKSFSSPQALGGHQNCHKMERLYQSYANNNIGNGIQFLNNIGMGGVGMNSSSFMQLPSSPTIPPFRPFFGGGANSLHHYQPMNMMTGNNNLEINNSYHPYHHGLFHNNAARPSNLFRPVPVRAGIAYPHAGSGSGSGALGVGNIIGAYQPNIAYPHAGSGAVGIRSISGAFPPPYGFQNRGLYGAGASEYPLPPLAAAGIGRIREDDDDSGGVMNKKPRVNEACDETQHGEFEFVLLPSAARNNNDVKVEIDFGLVPNRDGDGNAESLN 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30746g00005 347 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Stsc30746g00005 347 SUPERFAMILY beta-beta-alpha zinc fingers 70 102 IPR036236 -
Stsc30746g00005 347 Pfam C2H2-type zinc finger 72 96 - -
Stsc30746g00005 347 MobiDBLite consensus disorder prediction 1 70 - -
Stsc30746g00005 347 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 6 105 IPR044246 GO:0009788
Stsc30746g00005 347 MobiDBLite consensus disorder prediction 1 23 - -
Stsc30746g00005 347 Gene3D Classic Zinc Finger 55 111 - -
Stsc30746g00005 347 MobiDBLite consensus disorder prediction 24 40 - -
Stsc30746g00005 347 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 100 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30746g00005 Stsc-Chr30746 22904 24162 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30746g00005 67 167 C2H2 Transcription Factor Family AT5G27880 33.913 1.15e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc30746g00005 zf-C2H2_6 5.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30746g00005 - - adu:107494137 258.455