Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30746g00001 ATGTCTAACACATCATCCTCCTCTTCAGCTAACCAGCCATGCCCAAGCAACAAGGGCAAAGAGAAAGTCACTTATGATGATGAGATGAACAAGGGCAAGGCCAAGGGGATCCTTATCAAGGAACCAGATCATCATTATTATAATTCAAGTAGTGATGATGATCATGATGGTTTAATGGATCCCAACAACAACGATGGTTCTGCTGCTTTTGCCGTTGCTGCTGAAGAAAGTAGTGATGATTCCACTGAAGAAGGGGAACCCAGCCCTGACAACTCTGTCACTGCTGGTGGTAACCGAAATTCGCCAAGGGTATACAATTGCAGCTATTGTGAGAAGAGCTTCGCTTCCCCACAAGCTCTTGGAGGTCACCAAAACAGTCACAAAATGGAGAGATTGTACCAATCCCAAACCAATAATACCAACGGAAATGGGATCCAATTCTTGAATAACGTTGGCATGGGTGGTGTGGGAATGGGTTTGGGTATGAACCCATCACCATCAAGCTTCATGCCTCCTACTTCGCCAACCATCCCTCCTTTCAGGCCCTTCTTCGGTGGGGGAGCTAATAGCCTTCATCACTACCAGCCCATGAATATGATGATGGGAAACAACAATCTTGAAATTAACAATAGCATTTATCCTTATCATCATGGTTTGGTCCAGAACAATGCAGCGAGACCATCAAACCTTTTCAGGCCTGTTCCTGTGCGTGCTGGTATTGCATACCCTCATGCTGGCTCTGGTTCTGGTTCTGGTGCATTGGGGGTTGAAAACATAATCGGTGCATTTCAGCCCAACATTGCATACCCTCATGCTGGTTCTGGTTCTGGTGCAGTTGGGATTGGTGAATTTCAGCGTCCATATGGATTTCAAAGCAGAGGTGCATCTGAGCATCCTCATCCTCCTCGTCCTCCTATGGCGGCGGCTGCTGGGATTAGAAGAATTAGAGAGGACGACGACGAGAGTGGTGGGGTGAACAAGAGGCCTAGGCTGAATGAGGCTTGTGATGAGACCCAACATGGTGAATTTAAGTTTGTTTTGCTTCCATCTGCAGCAAGAAACAACGATGATACTAAGGTGGAGATTGACTTTGGTTTGGTTCCAAAGAGAGACGGAGATGGAAATTGA 1128 0.4654 MSNTSSSSSANQPCPSNKGKEKVTYDDEMNKGKAKGILIKEPDHHYYNSSSDDDHDGLMDPNNNDGSAAFAVAAEESSDDSTEEGEPSPDNSVTAGGNRNSPRVYNCSYCEKSFASPQALGGHQNSHKMERLYQSQTNNTNGNGIQFLNNVGMGGVGMGLGMNPSPSSFMPPTSPTIPPFRPFFGGGANSLHHYQPMNMMMGNNNLEINNSIYPYHHGLVQNNAARPSNLFRPVPVRAGIAYPHAGSGSGSGALGVENIIGAFQPNIAYPHAGSGSGAVGIGEFQRPYGFQSRGASEHPHPPRPPMAAAAGIRRIREDDDESGGVNKRPRLNEACDETQHGEFKFVLLPSAARNNDDTKVEIDFGLVPKRDGDGN 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30746g00001 375 Gene3D Classic Zinc Finger 86 147 - -
Stsc30746g00001 375 MobiDBLite consensus disorder prediction 1 100 - -
Stsc30746g00001 375 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Stsc30746g00001 375 MobiDBLite consensus disorder prediction 20 60 - -
Stsc30746g00001 375 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
Stsc30746g00001 375 MobiDBLite consensus disorder prediction 1 18 - -
Stsc30746g00001 375 Pfam C2H2-type zinc finger 104 128 - -
Stsc30746g00001 375 SUPERFAMILY beta-beta-alpha zinc fingers 102 134 IPR036236 -
Stsc30746g00001 375 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 139 IPR044246 GO:0009788
Stsc30746g00001 375 MobiDBLite consensus disorder prediction 289 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30746g00001 Stsc-Chr30746 8124 9492 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30746g00001 102 131 C2H2 Transcription Factor Family AT5G57520 66.667 1.79e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc30746g00001 zf-C2H2_6 4.7e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30746g00001 - - adu:107494137 239.58