Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30742g00003 ATGGAAGAGTTGATCATTTCACCTTCTTCATCATCTTCCCTAGTTTCCACCACAACCCCATCATCAACACAACAAATTCCCCTTCAACAAAACCTTCAATTCTTGCTCCAATCCCAACCCAATTGGTGGGTCTACGCCATCTTCTGGCACGCCTCTAATGACAACAATGGCAACCTCTACCTCTCTTGGGGTGAAGGCCATTTCCAAGGCACCAACACCAACACTACCAAACACACTCCCAAAACCCACCAAAACGACGCCGAATGGTTCTACCTCATGTCGTTGACCAGAACCTTTTCTATTGGGAACTCTTCATCTTCCTCTCTCCCCGGTAAGGCTTTCGCTTTGGGCTCAGTTCTTTGGCTCAACAGCAAAGAAGAGCTTCAATTCTATAACTGCGAGAGAGCCAAAGAAGCCCACGCTCACGGCATCGAAACCTTGATCTGCATCCCCACCAAAAACGGCGTCGTTGAGATGGGCTCTTACAACACCATCCCTCAAAATTGGAACCTCATTCACCATGTCAAGTCCCTCTTGGAAGATTCCATCATCACCATCAACAACAACCATAATAACCAAAACACTAATAATAATAGTCACAACGATCTTGTTGACAACACCGTTCAACAAATCTTTGATAATAATGAAGAATTCTCCTTCGCGGAGATTGGTTTCATCACCGGCCTTGAAGATGGAGATCAGATCAATTTCAACAAAGAAAGCAAAGATTCGTCGTCAGTAGTGTTCTCACATCAACAACCACAACAGCAACCGCCACAATCATCATATGCGGACTCGGAGCATTCAGATTCCGACTGTCCAATCCAAAAAACAGAAAACACTGAAAGAAAGCAGCAATCAGAGGCTCCGAAGAGCAAGAGAGGGAGGAAACCCGTCCTTAACCGCGAAACACCGGTGAATCATGTGGAGGCGGAGAGACAACGAAGGGAGAAGCTTAACCACCGATTCTATGCCTTGCGAGCGGTGGTTCCAAACGTTTCAAGAATGGACAAGGCTTCGTTGTTGTCGGATGCCGTTGCTTACATCAATGAGTTGAAGACGAAGATCAAAGATCTCGAATCTCAGGTGGATAATAATAACAATCAGTCCAAGAAGAGAGTGAAGCTCGAAACCGGAGATACCATAGACAGCACGGTGACTAATTCGTCCACAACTGTAGTGGATCAACAGAAGCATAGTAAAAGAAATGATATCAACAATGGCGATTTTGGAATTGGCGTTGCTGCTGAAGTCGATGTGAAGATCATAGGGGAAGATGCCATGGTTAGGGTTCAGAGTGAGAATGTGAATCACCCAGGTGCGAGAGTGATGGGAGCATTGAGGGATATGGAGTTTCAAGTTCATCATGCTAGCATGACTTGTGTCAATGAATTAATGCTTCAAGATGTTGTTGGAAAAGTGCCCAATGGAATCATCAGAAGTGAAGAGGGGATTCGATCTGCCATTCTCATGAGGTTGGATAATCACTATAATTAG 1497 0.4502 MEELIISPSSSSSLVSTTTPSSTQQIPLQQNLQFLLQSQPNWWVYAIFWHASNDNNGNLYLSWGEGHFQGTNTNTTKHTPKTHQNDAEWFYLMSLTRTFSIGNSSSSSLPGKAFALGSVLWLNSKEELQFYNCERAKEAHAHGIETLICIPTKNGVVEMGSYNTIPQNWNLIHHVKSLLEDSIITINNNHNNQNTNNNSHNDLVDNTVQQIFDNNEEFSFAEIGFITGLEDGDQINFNKESKDSSSVVFSHQQPQQQPPQSSYADSEHSDSDCPIQKTENTERKQQSEAPKSKRGRKPVLNRETPVNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYINELKTKIKDLESQVDNNNNQSKKRVKLETGDTIDSTVTNSSTTVVDQQKHSKRNDINNGDFGIGVAAEVDVKIIGEDAMVRVQSENVNHPGARVMGALRDMEFQVHHASMTCVNELMLQDVVGKVPNGIIRSEEGIRSAILMRLDNHYN 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30742g00003 498 Coils Coil 342 369 - -
Stsc30742g00003 498 MobiDBLite consensus disorder prediction 236 315 - -
Stsc30742g00003 498 MobiDBLite consensus disorder prediction 1 20 - -
Stsc30742g00003 498 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 28 178 IPR025610 -
Stsc30742g00003 498 MobiDBLite consensus disorder prediction 239 269 - -
Stsc30742g00003 498 CDD bHLH_AtAIB_like 302 362 - -
Stsc30742g00003 498 Pfam Helix-loop-helix DNA-binding domain 307 352 IPR011598 GO:0046983
Stsc30742g00003 498 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 303 352 IPR011598 GO:0046983
Stsc30742g00003 498 PANTHER MYC 12 492 IPR045084 GO:0003700|GO:0006355
Stsc30742g00003 498 MobiDBLite consensus disorder prediction 270 315 - -
Stsc30742g00003 498 Gene3D - 299 370 IPR036638 GO:0046983
Stsc30742g00003 498 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 304 366 IPR036638 GO:0046983
Stsc30742g00003 498 SMART finulus 309 358 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30742g00003 Stsc-Chr30742 14879 16837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30742g00003 1 476 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 33.274 9.81e-85 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30742g00003 bHLH-MYC_N 6.5e-44 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30742g00003 - K13422 gmx:100804965 494.967