Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30735g00003 ATGTCGAACCGTCGTTCATCGTTCTCTTCCTCAACGACGTCGTCTTTGGCAAAACGCCATGCATCGGCGGCGCCCTCTTCTTTAACCGAAAACCACAACGCGGCGGGAAAGCCTACTTCCCTTGCCAAGAAGCGAGCGCCTCTAACAAACCTCACCAATCACATTCCGAGACGCTCTTCTCTGGTTCCTTGTGCTACTAAAGTTGCTAAGACCAAGAAAGACGCTTCATCATGCAGCACTGCTACAATTAGTTCTTCAATTTCGAACAACAAGGTACCACCGGTTTTGCAGAGTGTTGTGAAGGCCAATGCGGTTGTTCTTCCTAAGCCTGGTTATGTCTCTGGAAGGGAAGAAGATGATGCTAAGAAAGTTGTTACTGCTCATGTCTCAAAGATGGATATCTCTCCTTGTAAATCAGATGGGGCATCTGTTTCCATGTCTGTGGATGAGAGCATGTCTTCTTGTGATTCTTTCAAGAGCCCTGTCATTGAGTATTTGGACAACAATGATATCTCGCCGGCGGTCGAATCGATCGAGAGGAAGACGTTCAGCACCCTCAACATTTCTGATACTCCAGAGCCACCAGCAGGGAACATATGTAGTAGGGACATACTTGTTGGATTGGAGAAAGAGGACAAAGTTGTGAATGTTGATAACAACTACATGGATCCTCAGCTTTGTGCAACATTTGCTTGTGATATATACAAGCACCTCCGTGCATCTGAGGCAAAGAAAAGACCTTCCACGGACTTCATGGAGAGTGTTCAGAAGGACATAAATCCCAGCATGCGTGCTATATTGATAGATTGGCTTGTGGAGGTAGCCGAAGAGTATCGATTGGTACCTGATACGTTGTATTTGACAGTTAACTACATAGATAGGTATCTTTCAGGGAATCCGATGAACAGGCAAAAATTACAATTACTGGGTGTTGCTTCCATGATGGTTGCCTCTAAATATGAGGAGATTTGTGCACCCCAGGTGGAGGAATTTTGTTACATTACTGACAACACATACTTCAAAGAAGAGGTTTTGCAAATGGAATCGGCTGTCTTGAATTATCTGAAGTTTGAAATGACAGCTCCAACAATCAAGTGTTTCTTGAGAATGCCACATTGA 1119 0.445 MSNRRSSFSSSTTSSLAKRHASAAPSSLTENHNAAGKPTSLAKKRAPLTNLTNHIPRRSSLVPCATKVAKTKKDASSCSTATISSSISNNKVPPVLQSVVKANAVVLPKPGYVSGREEDDAKKVVTAHVSKMDISPCKSDGASVSMSVDESMSSCDSFKSPVIEYLDNNDISPAVESIERKTFSTLNISDTPEPPAGNICSRDILVGLEKEDKVVNVDNNYMDPQLCATFACDIYKHLRASEAKKRPSTDFMESVQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMNRQKLQLLGVASMMVASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAVLNYLKFEMTAPTIKCFLRMPH 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30735g00003 372 MobiDBLite consensus disorder prediction 1 53 - -
Stsc30735g00003 372 PANTHER CYCLINS 170 369 IPR039361 -
Stsc30735g00003 372 MobiDBLite consensus disorder prediction 1 36 - -
Stsc30735g00003 372 Pfam Cyclin, N-terminal domain 233 359 IPR006671 -
Stsc30735g00003 372 Gene3D - 248 359 - -
Stsc30735g00003 372 FunFam Mitotic cyclin 6 247 347 - -
Stsc30735g00003 372 PIRSF Cyclin_A_B_D_E 1 371 IPR046965 GO:0016538|GO:0044772
Stsc30735g00003 372 SUPERFAMILY Cyclin-like 223 359 IPR036915 -
Stsc30735g00003 372 ProSitePatterns Cyclins signature. 264 295 IPR006671 -
Stsc30735g00003 372 SMART cyclin_7 269 353 IPR013763 -
Stsc30735g00003 372 CDD CYCLIN_AtCycA_like_rpt1 223 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30735g00003 Stsc-Chr30735 2099 5573 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30735g00003 1 369 Core Cell Cycle Gene Families AT1G44110 58.400 4.93e-128 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30735g00003 K06627 - gmx:547781 464.151