Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30735g00002 ATGTCGAACCGTCGTTCATCGTTCTCTTCCTCAACGACGTCGTCTTTGGCAAAACGCCATGCATCGGCGGCGCCCTCTTCTTTAACCGAAAACCACAACGCGGCGGGAAAGCCTACTTCCCTTGCCAAGAAGCGAGCGCCTCTAACAAACCTCACCAATCACATTCCGAGACGCTCTTCTCTGGTTCCTTGTGCTACTAAAGTTGCTAAGACCAAGAAAGACGCTTCATCATGCAGCACTGCTACAATTAGTTCTTCAATTTCGAACAACAAGGTACCACCGGTTTTGCAGAGTGTTGTGAAGGCCAATGCGGTTGTTCTTCCTAAGCCTGGTTATGTCTCTGGAAGGGAAGAAGATGATGCTAAGAAAGTTGTTACTGCTCATGTCTCAAAGATGGATATCTCTCCTTGTAAATCAGATGGGGCATCTGTTTCCATGTCTGTGGATGAGAGCATGTCTTCTTGTGATTCTTTCAAGAGCCCTGTCATTGAGTATTTGGACAACAATGATATCTCGCCGGCGGTCGAATCGATCGAGAGGAAGACGTTCAGCACCCTCAACATTTCTGATACTCCAGAGCCACCAGCAGGGAACATATGTAGTAGGGACATACTTGTTGGATTGGAGAAAGAGGACAAAGTTGTGAATGTTGATAACAACTACATGGATCCTCAGCTTTGTGCAACATTTGCTTGTGATATATACAAGCACCTCCGTGCATCTGAGGCAAAGAAAAGACCTTCCACGGACTTCATGGAGAGTGTTCAGAAGGACATAAATCCCAGCATGCGTGCTATATTGATAGATTGGCTTGTGGAGGTAGCCGAAGAGTATCGATTGGTACCTGATACGTTGTATTTGACAGTTAACTACATAGATAGGTATCTTTCAGGGAATCCGATGAACAGGCAAAAATTACAATTACTGGGTGTTGCTTCCATGATGGTTGCCTCTAAATATGAGGAGATTTGTGCACCCCAGGTGGAGGAATTTTGTTACATTACTGACAACACATACTTCAAAGAAGAGGTTTTGCAAATGGAATCGGCTGTCTTGAATTATCTGAAGTTTGAAATGACAGCTCCAACAATCAAGTGTTTCTTGAGACGGTTCGTTCGTGCGGCTCAAGGAGTCAGTGAGACCCCTTCGTTGCAACTAGAGTGCTTGACAAACTACATTGCCGAATTGTCTTTGTTGGAGTACAGTATGCTTTGTCATGCTCCGTCACTAATAGCTGCTTCTGCAATTTTTCTGGCCAAATTTATACTCTCCCCCTCAACCAAACCATGGAATGCCACATTGAAGCACTATACACAATACCAGGCTTCTGATTTGTGTATTTGTGTAAGGGATCTCCATAGGCTTTGTTGCAACAATCCTAGCTCCAATTTGCCTGCAATTAGGGAAAAGTATAGTCAGCACAAGTACAAAAGTGTGGCCAAGAAGTATTGCCCTCCCTCAATACCTTCAGAATATTTTCAGAATTGA 1488 0.4422 MSNRRSSFSSSTTSSLAKRHASAAPSSLTENHNAAGKPTSLAKKRAPLTNLTNHIPRRSSLVPCATKVAKTKKDASSCSTATISSSISNNKVPPVLQSVVKANAVVLPKPGYVSGREEDDAKKVVTAHVSKMDISPCKSDGASVSMSVDESMSSCDSFKSPVIEYLDNNDISPAVESIERKTFSTLNISDTPEPPAGNICSRDILVGLEKEDKVVNVDNNYMDPQLCATFACDIYKHLRASEAKKRPSTDFMESVQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMNRQKLQLLGVASMMVASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAVLNYLKFEMTAPTIKCFLRRFVRAAQGVSETPSLQLECLTNYIAELSLLEYSMLCHAPSLIAASAIFLAKFILSPSTKPWNATLKHYTQYQASDLCICVRDLHRLCCNNPSSNLPAIREKYSQHKYKSVAKKYCPPSIPSEYFQN 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30735g00002 495 Pfam Cyclin, C-terminal domain 362 481 IPR004367 -
Stsc30735g00002 495 SUPERFAMILY Cyclin-like 223 359 IPR036915 -
Stsc30735g00002 495 SUPERFAMILY Cyclin-like 362 487 IPR036915 -
Stsc30735g00002 495 SMART Cyclin_C_2 362 485 IPR004367 -
Stsc30735g00002 495 ProSitePatterns Cyclins signature. 264 295 IPR006671 -
Stsc30735g00002 495 PANTHER CYCLINS 174 477 IPR039361 -
Stsc30735g00002 495 SMART cyclin_7 366 454 IPR013763 -
Stsc30735g00002 495 SMART cyclin_7 269 353 IPR013763 -
Stsc30735g00002 495 CDD CYCLIN_AtCycA_like_rpt1 223 358 - -
Stsc30735g00002 495 MobiDBLite consensus disorder prediction 1 53 - -
Stsc30735g00002 495 CDD CYCLIN_AtCycA-like_rpt2 362 476 - -
Stsc30735g00002 495 PIRSF Cyclin_A_B_D_E 1 492 IPR046965 GO:0016538|GO:0044772
Stsc30735g00002 495 FunFam Mitotic cyclin 6 247 347 - -
Stsc30735g00002 495 MobiDBLite consensus disorder prediction 1 36 - -
Stsc30735g00002 495 FunFam Cyclin A1 349 481 - -
Stsc30735g00002 495 Gene3D - 247 360 - -
Stsc30735g00002 495 Pfam Cyclin, N-terminal domain 233 359 IPR006671 -
Stsc30735g00002 495 Gene3D - 233 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30735g00002 Stsc-Chr30735 2099 5573 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30735g00002 1 495 Core Cell Cycle Gene Families AT1G44110 61.078 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30735g00002 K06627 - gmx:547781 688.337