Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30735g00001 ATGTCGAACCGTCGTTCATCGTTCTCTTCCTCAACGACGTCGTCTTTGGCAAAACGCCATGCATCGGCGGCGCCCTCTTCTTTAACCGAAAACCACAACGCGGCGGGAAAGCCTACTTCCCTTGCCAAGAAGCGAGCGCCTCTAACAAACCTCACCAATCACATTCCGAGACGCTCTTCTCTGGTTCCTTGTGCTACTAAAGTTGCTAAGACCAAGAAAGACGCTTCATCATGCAGCACTGCTACAATTAGTTCTTCAATTTCGAACAACAAGGTACCACCGGTTTTGCAGAGTGTTGTGAAGGCCAATGCGGTTGTTCTTCCTAAGCCTGGTTATGTCTCTGGAAGGGAAGAAGATGATGCTAAGAAAGTTGTTACTGCTCATGTCTCAAAGATGGATATCTCTCCTTGTAAATCAGATGGGGCATCTGTTTCCATGTCTGTGGATGAGAGCATGTCTTCTTGTGATTCTTTCAAGAGCCCTGTCATTGAGTATTTGGACAACAATGATATCTCGCCGGCGGTCGAATCGATCGAGAGGAAGACGTTCAGCACCCTCAACATTTCTGATACTCCAGAGCCACCAGCAGGGAACATATGTAGTAGGGACATACTTGTTGGATTGGAGAAAGAGGACAAAGTTGTGAATGTTGATAACAACTACATGGATCCTCAGCTTTGTGCAACATTTGCTTGTGATATATACAAGCACCTCCGTGCATCTGAGGCAAAGAAAAGACCTTCCACGGACTTCATGGAGAGTGTTCAGAAGGACATAAATCCCAGCATGCGTGCTATATTGATAGATTGGCTTGTGGAGGTAGCCGAAGAGTATCGATTGGTACCTGATACGTTGTATTTGACAGTTAACTACATAGATAGGTATCTTTCAGGGAATCCGATGAACAGGCAAAAATTACAATTACTGGGTGTTGCTTCCATGATGGTTGCCTCTAAATATGAGGAGATTTGTGCACCCCAGGTGGAGGAATTTTGTTACATTACTGACAACACATACTTCAAAGAAGAGGTTTTGCAAATGGAATCGGCTGTCTTGAATTATCTGAAGTTTGAAATGACAGCTCCAACAATCAAGTGTTTCTTGAGGTAA 1110 0.445 MSNRRSSFSSSTTSSLAKRHASAAPSSLTENHNAAGKPTSLAKKRAPLTNLTNHIPRRSSLVPCATKVAKTKKDASSCSTATISSSISNNKVPPVLQSVVKANAVVLPKPGYVSGREEDDAKKVVTAHVSKMDISPCKSDGASVSMSVDESMSSCDSFKSPVIEYLDNNDISPAVESIERKTFSTLNISDTPEPPAGNICSRDILVGLEKEDKVVNVDNNYMDPQLCATFACDIYKHLRASEAKKRPSTDFMESVQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMNRQKLQLLGVASMMVASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAVLNYLKFEMTAPTIKCFLR 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30735g00001 369 PIRSF Cyclin_A_B_D_E 1 369 IPR046965 GO:0016538|GO:0044772
Stsc30735g00001 369 MobiDBLite consensus disorder prediction 1 53 - -
Stsc30735g00001 369 SUPERFAMILY Cyclin-like 223 359 IPR036915 -
Stsc30735g00001 369 MobiDBLite consensus disorder prediction 1 36 - -
Stsc30735g00001 369 Gene3D - 233 369 - -
Stsc30735g00001 369 FunFam Mitotic cyclin 6 247 347 - -
Stsc30735g00001 369 Pfam Cyclin, N-terminal domain 233 359 IPR006671 -
Stsc30735g00001 369 PANTHER CYCLINS 170 368 IPR039361 -
Stsc30735g00001 369 ProSitePatterns Cyclins signature. 264 295 IPR006671 -
Stsc30735g00001 369 Gene3D - 247 360 - -
Stsc30735g00001 369 SMART cyclin_7 269 353 IPR013763 -
Stsc30735g00001 369 CDD CYCLIN_AtCycA_like_rpt1 223 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30735g00001 Stsc-Chr30735 2099 5573 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30735g00001 1 369 Core Cell Cycle Gene Families AT1G44110 58.400 4.82e-128 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30735g00001 K06627 - gmx:547781 464.151